Zingiber officinale (ginger): 122012609
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Entry
122012609 CDS
T08725
Name
(RefSeq) serine/threonine-protein phosphatase PP1-like
KO
K06269
serine/threonine-protein phosphatase PP1 catalytic subunit [EC:
3.1.3.16
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122012609
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
122012609
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122012609
03019 Messenger RNA biogenesis [BR:
zof03019
]
122012609
03041 Spliceosome [BR:
zof03041
]
122012609
Enzymes [BR:
zof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
122012609
Protein phosphatases and associated proteins [BR:
zof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
Catalytic subunits
122012609
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122012609
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
122012609
Spliceosome [BR:
zof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
122012609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Metallophos
STPPase_N
Motif
Other DBs
NCBI-GeneID:
122012609
NCBI-ProteinID:
XP_042425143
LinkDB
All DBs
Position
8A:complement(14040787..14042578)
Genome browser
AA seq
307 aa
AA seq
DB search
MDADVLDDIISRLLEVRKAKPGTLVQLAESEIHLLCVVARGIFLAQPNLLELEAPVKICG
DIHGQYSDLLRLFEYGGFPPAANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRG
NHESSSINRIYGFYDECKRRFSVRLWRTFGDCFNCLPVAALVDDKILCMHGGLSPELSRL
EQIKSLPRPTDVPEGGLLCDLLWADPGRDAQGWGENDRGVSWTFGADTLTEFLSRLDLDL
ICRAHQVVEDGYEFFADKQLVTIFSAPNYCGEFDNAGAMMIVDETLTCSFQIFKPAEREP
NTMLPRI
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atggatgcggatgtgctcgacgatatcattagccgattgctggaggtgcggaaagcgaaa
ccggggacgctagtccagcttgcggagtcggagatccacctgctctgcgtcgtcgcccgt
ggcatcttcctcgctcagcctaaccttctggagcttgaagctcccgtaaagatctgcggt
gatattcatggtcagtacagtgatctcttgaggctctttgagtatggtggttttcctccc
gctgcaaattatctattcttgggcgactatgttgatcgaggaaagcaaagcttagaaaca
atttgccttcttcttgcatataaaatcaagtatccagaaaactttttccttttgcgtggg
aatcatgaaagctcttcgataaatagaatatatggattttatgacgaatgcaaacgccga
ttcagtgtgagactttggaggacattcggtgattgtttcaactgccttccggtagctgct
cttgtagatgataagattttatgcatgcacggtggcctttctccggaactctctcggttg
gagcagattaaatctttacctcgaccaactgatgtccctgaaggtggtttattatgtgac
ttactttgggctgaccctggaagagatgctcaaggttggggagagaatgatagaggtgtc
tcttggacctttggggctgatacacttacagaattcctatctagacttgatttagatctt
atatgtagagcacatcaggttgtggaggacggctatgaattctttgctgacaagcagctt
gtaacgatattttcagcccccaattattgtggagaatttgataacgctggtgccatgatg
attgttgatgaaacattgacttgttctttccaaattttcaaacctgctgagagggaaccg
aatactatgctgccaagaatttga
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