Zingiber officinale (ginger): 122013411
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Entry
122013411 CDS
T08725
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122013411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122013411
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122013411
mRNA degradation factors
5'-3' decay
Decapping complex
122013411
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
122013411
NCBI-ProteinID:
XP_042425620
LinkDB
All DBs
Position
8B:30119526..30127987
Genome browser
AA seq
797 aa
AA seq
DB search
MKGLDAGGNPRSDAVGSFSASGSDSSLLFDASQYAFFNKGGVEEIELGGLEYDDDFLGLE
EESKFPSLGDKEIESLGSLSEIDDLATTFRKLNRVVNEPRSVGVIGDRGSFSRESSSNAD
WTQEADFPSWIDHQIFDAEDMQESKRWSSQPHATPSQFDELKSLYRTSSHPHQLQHHHSI
ESINVPKSSFTSYPPPGGQSLPLTRHSSLPSVGIAEQISTPIPYSGPQNQLGGLRHGLHY
NPSMQFTHSGVSSASLPRNYLLNHSDLFAGENCNLLPDLFSQQLPPQGGLISPQFLSQLQ
QQRLLRQSLTHYSHLQPNLCNRYYHPQMMTNNFESVSGMPNFREHRLKSSHRGKQNMRLS
QRSETGSLKSDSGFQFRSKYMSGQEIESILKMQHAVTHITDPYLDDYYHQACLAKKSSNL
RLKQPFCPTAIKDPPSRSRSNNESHVQVDGLGRVSFSSIRRPRPLLEVETPSASGDDQKP
SMKPLEQEPMLAARITVEDCISLLLDVDDIDRVLQNNQPQDGGLQLKRRRQVLLDVIAAS
LQLVDPFGPGKSDNSVVFAPKDDRVFLRIISLPKGRKLISRYLHLLPPGSHLTRVVCMAI
FRHLRLLFGGLPSDPSAAETTINLSKTVSSCVRNMELSALGACLAAVVCSSEQPPLRPIG
SSTGDGASIIIKSVLNRATELLTEPHVTSNYSFANRTLWQASFDAFFGLLTHYCLSKYDS
IMRMLLVQASGISMAGPEATIAISREMPVELLRASLPHTNEHQREMLLEFAQRSMPITDT
GTRGGQSRPDSSESVPG
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgaaggggctcgatgcgggaggaaaccctaggagcgatgccgtcgggagcttctccgcc
agtggatcagatagtagtcttctgtttgatgcttcacaatatgcattcttcaataagggt
ggcgtggaggaaattgagttaggtggtttggagtatgatgatgactttcttggtcttgag
gaggaatccaagtttccttctcttggtgataaagagattgaaagcttagggtccttgtct
gagattgatgacctggcaacaacttttagaaagctgaacagagtcgtcaatgaaccaagg
agtgttggtgttattggtgatagagggtctttttctagagaaagttcttctaatgcggac
tggacacaagaagctgattttccaagctggattgatcatcaaatatttgatgctgaagat
atgcaagaaagcaaacggtggtcgtcacaaccacatgctactccatctcaatttgatgaa
ctaaagtccctgtaccgtacatcttctcatcctcaccaactgcagcatcatcactctatt
gaatcaatcaatgtgcccaagtcatctttcacttcctacccaccacctgggggacaaagc
cttcctctaacacgccattcaagcttaccatcagtgggtattgcagagcagatatctact
ccaattccttattctggtcctcaaaatcagttgggaggattgcgtcatggtcttcactat
aatccaagtatgcagtttacacattctggtgtttcatcagccagtttgccaagaaattac
ttgttgaatcattctgacctctttgccggggagaactgcaatctgttgcctgacttattt
tcacaacagttacctccacaaggtggtttaatttcaccacagtttctgtcacagctacaa
cagcagagattgctccggcaatccctcacccattactctcacctgcaacctaatttatgc
aaccggtattatcatcctcagatgatgacaaacaactttgagtcagttagtggaatgcct
aattttagagagcatagattaaaatcatctcacagaggaaaacagaatatgcgattgtca
caacgatcggaaactggcagcttgaagagtgacagtggttttcaatttagatcaaagtac
atgtccggacaagaaatagaaagcattctgaaaatgcagcatgcagtgacacatattact
gatccttatttggatgattattaccatcaagcatgtcttgcaaaaaaatcatctaattta
agattaaagcaaccattttgtccaacagcaataaaggatcctccatcacggtcacgttct
aataatgaatctcatgttcaggttgatggacttggaagagtttcattctcttccattcgc
aggcctcgtcctctccttgaggttgagacgccatctgcatcaggtgatgatcagaaaccc
tctatgaagcctcttgaacaggagcctatgttggctgctaggatcactgttgaagattgt
attagccttcttctggatgtggatgatattgatcgagttctacagaataaccaaccacag
gacggtgggttgcaactgaagcggagaagacaggttcttcttgatgtcattgctgcatca
ctccagcttgttgatccatttggtcctggtaaatctgataactcagttgtgtttgcccca
aaggatgaccgtgttttcctacgtatcatttctcttccgaagggtcgaaagctcatatca
cgctatcttcaccttctgcctcctggaagtcatctgacaagagtagtctgcatggccatt
ttccgccaccttaggcttttatttggcggtctaccttcagatcctagtgcagcagagaca
accatcaacctttccaagactgtgtcttcatgtgtgcgcaatatggaacttagcgctctt
ggtgcttgcctggctgcagtggtatgttcatctgaacaaccacctctgcgtcctattgga
agttctactggtgatggagccagcataattataaagtctgttctcaatagagctacagaa
cttctaacagaaccccacgtcacaagcaactacagtttcgccaatcgaactctgtggcag
gcatcttttgatgctttctttgggcttctaacccactattgcctgagcaaatatgacagt
ataatgcgaatgctgcttgtccaagcatctggtatttcaatggcaggacctgaagcaacc
atagccattagcagagagatgcctgtcgagctgttgcgtgcaagtcttcctcacacaaac
gaacatcagcgcgagatgctgcttgaatttgctcagaggtccatgcctattaccgatact
ggtactcggggaggtcagagcagacctgatagttctgagtccgtgccaggatga
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