Zingiber officinale (ginger): 122013494
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Entry
122013494 CDS
T08725
Name
(RefSeq) SKP1-like protein 1
KO
K03094
S-phase kinase-associated protein 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03083
Polycomb repressive complex
zof04120
Ubiquitin mediated proteolysis
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122013494
04120 Ubiquitin mediated proteolysis
122013494
09126 Chromosome
03083 Polycomb repressive complex
122013494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
122013494
04121 Ubiquitin system [BR:
zof04121
]
122013494
03036 Chromosome and associated proteins [BR:
zof03036
]
122013494
Membrane trafficking [BR:
zof04131
]
Endosome - Lysosome transport
Acidification regulators
RAVE complex
122013494
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Adaptor protein
122013494
Cul7 complex
122013494
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
122013494
Centromeric chromatin formation proteins
Kinetochore proteins
CBF3 complex
122013494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Skp1_POZ
Skp1
Motif
Other DBs
NCBI-GeneID:
122013494
NCBI-ProteinID:
XP_042425706
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All DBs
Position
8B:10541678..10549926
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AA seq
288 aa
AA seq
DB search
MAKTITLRSSDGEVFEVDEAVATVSQIIKHVIEDCPDNTIPLPNVTSKILPEVIEYCKKH
VDSSSDGDSRLADEELKSWDAKFVKVNKAILFQLCLAADYLYIKGLLDLTFQTVADKTKG
MTLEEIRFKKVVTLRSSDGELFVVDEVVAMKSQTIKNLIEDDCADSAIPLPNVTSDILLQ
VIEYCEKHVDDDATTASNSSDDDSRLAEEELKSWDAEFVKVDQATLFDLILAANYLNIKG
LLDLTCQTVVDMIKGKTPEEIRKTFNIKDDFTPEEEEEVRRENPWAFE
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagacgatcacgctgaggagctccgatggtgaggttttcgaggtcgacgaggcg
gtcgccacggtatcgcagatcatcaagcacgtgatcgaggactgccccgacaacaccatc
cctcttccaaacgtcacctccaagatcctcccggaagtcatcgagtattgcaagaagcac
gtcgactcgtcatctgatggcgactcacggctagctgacgaagaactcaagtcctgggat
gccaagtttgtcaaggtcaataaggcgatcctattccaactctgtctggctgcagattac
ctgtatataaaagggcttctggatttgactttccaaactgtggccgataagacgaaggga
atgaccctcgaagaaatccgcttcaaaaaggttgttactctgaggagctccgacggtgag
ctattcgtggtcgacgaggtggttgccatgaaatcgcagaccatcaagaacttgatcgag
gacgactgcgccgacagcgccatccctcttccaaatgtcacctccgatatccttctccaa
gtcatcgagtattgcgagaagcacgtcgacgacgacgccaccactgcctcgaactcatct
gatgatgattcgcggctcgctgaggaagaactcaagtcatgggatgccgagtttgtcaag
gtcgatcaggcgaccctattcgatctcatactggctgcaaactacctgaatataaaaggg
cttctggatttgacttgtcaaactgtggtcgatatgataaagggaaagaccccagaagaa
atccgcaaaacattcaacatcaaagatgactttactccagaagaagaggaagaggtccga
agggagaatccatgggccttcgaatga
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