Zingiber officinale (ginger): 122014452
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Entry
122014452 CDS
T08725
Name
(RefSeq) DNA repair protein RadA-like
KO
K04485
DNA repair protein RadA/Sms
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
122014452
DNA repair and recombination proteins [BR:
zof03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
122014452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_25
Zn_ribbon_LapB
ChlI
ATPase
DnaB_C
Lon_C
DUF7130
NACHT
AAA
AAA_16
AAA_22
AAA_19
NTPase_1
Zn_ribbon_3
nSTAND3
zf-ANAPC11
nSTAND_NTPase5
AAA_29
DUF7125
ABC_tran
AAA_18
DZR
AAA_5
Motif
Other DBs
NCBI-GeneID:
122014452
NCBI-ProteinID:
XP_042426617
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Position
8B:60603271..60669272
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AA seq
807 aa
AA seq
DB search
MQSFRSHFLRHKLLVLSGSKSFAGARSLISSFAGARPLISSPVHFRSSSFHSSDRRWEEE
SRDSPASSVGVEVHKFSTYVDPLEGKIVTMQVADERDDNGGEAEVNINTVAAAKVSSGSS
SQEFNSQETDENKQNSLSYAGVKRKSRKSRKTKSTWVCENCGDIQAQWWRTCPNCQEVGT
FKCFVESEVSKSRGVEISEALVSSWLPQESRISTPISLAEVTSGTDQSEWRIPLDRRWEE
ESRDSPASSVGVEVHKFSTYVDPLEGKIVTMQVADERDDNGGEAEVSINTVAAAKVSSDS
SSQELNSQETDENKQNSLSYSGVKRKSGKTKFTWVCENCGDIQAQWWGTCPNCQEVGTFK
CFVESEVSKSRGAEISEALVSSWLPQESRISTPISLAEVTSGTDQSEWRIPLEGHFGSEF
CRVLGGGLVPGSLVLIGGDPGVGKSTLLLQIAAILARGFNHGGPAPVVYASGEESIEQIG
NRAQRMSITTKDLYLYSNTDIEDILEKITKLSPRALIVDSIQTVYLKGVTGSAGNVMQIK
ECTSALLRFAKQTNIPVFLSGHVTKTGDIAGPRILEHIVDAVFYMEGDRYTSYRLVRSVK
NRFGSTDELGVFEMSDVGLQAVQNPSEIFLSEDFSDSDVLVGRAVAVTLDGSRTFLIEIQ
ALCASDCSVRRYFNGIGDRKASLMIAVLIKQAGLKLQDNVIFLNVVGGFELTETAGDLAI
AVAISSSFLEFPIPNNVAFIGEVGLGGELRSVPRIDKRLMSLAKLGFKKCIIPETANKLL
KSLNLDIEIISCKNLKEVINVVFSKES
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctttccgtagtcatttccttcgccacaagctcctcgttctctctggaagcaag
tcctttgcgggtgctcgatctctcatttcttcctttgcgggtgctcgacccctcatttct
tcgccggttcacttccgaagtagtagctttcattccagcgatcggcgatgggaggaagaa
tctagagattcacctgcatccagcgtgggcgtggaggtgcataagttttcgacatacgtt
gatcctctggagggaaagatcgtgacaatgcaagttgcagacgagagagatgataacgga
ggagaggcggaggtgaacatcaatacagtggctgccgcaaaggtaagtagtggtagtagc
agccaggagttcaatagtcaggagactgacgaaaataagcagaattccctatcctatgct
ggtgtaaagagaaagtcgaggaagtcgaggaagacgaagtctacttgggtttgtgaaaat
tgcggagatatacaagcacagtggtggcgaacgtgcccaaactgccaagaggtaggtacg
tttaagtgcttcgtggagtctgaggtgagcaagtcaaggggggttgagatttctgaagcc
ctagttagttcgtggctcccccaggagtcaagaataagcacccctatcagcttggccgaa
gtgacatcaggcacagaccagtcagaatggagaattccgctcgatcggcgatgggaggaa
gaatctagggattcacctgcatccagcgtgggcgtggaggtgcataagttttcgacatac
gttgatcctctggagggaaagatcgtgacaatgcaagttgcagacgagagagatgataac
ggaggagaggcggaggtgagtatcaatacagtggctgccgcaaaggtaagtagtgatagt
agcagccaggagctcaatagtcaggagactgacgaaaataagcagaattccctatcctat
tctggtgtaaagaggaagtcggggaagacgaagtttacttgggtttgtgaaaattgcgga
gatatacaagcacagtggtggggaacgtgcccaaactgccaagaggtaggtacgtttaag
tgcttcgtggagtctgaggtgagcaagtcaaggggggctgagatttctgaagccctagtt
agttcgtggctcccccaggagtcaagaataagcacccctatcagcttggccgaagtgaca
tcaggcacagaccagtcagaatggagaattccgctagagggacactttggatctgagttc
tgtagggttcttggtggtggtctcgtgccaggctccttagttttaattggtggcgaccct
ggagttggcaagagtacactactattgcagattgctgctattttagctcgaggattcaat
catggagggcctgctccagttgtatatgcatctggtgaggagagcattgaacaaatagga
aacagggcacagcgtatgagcatcacaaccaaggatctttacttgtattcaaatacagac
attgaggatatattggaaaaaataacaaaactgtccccacgggctcttattgtcgattct
attcagactgtttatttgaaaggagttactggtagtgctggaaatgtcatgcagattaag
gagtgcacatcggccttactccgatttgctaagcagacaaatatccctgttttcttgagt
gggcatgtgacaaaaacaggagatattgctgggcctcgcatcttggagcatatagtggat
gctgttttctatatggagggtgataggtacacatcttatcggctagtgcgctctgtgaag
aaccgctttggttcaactgatgagcttggagtgtttgaaatgtcagacgttggcttgcaa
gctgtccaaaatccaagtgaaatattcctaagtgaagacttttctgactctgatgtatta
gttggtcgtgcagtagcagtaacccttgatggttctcgaacttttttgattgagatccag
gcattatgcgcatctgattgttcagttagaagatatttcaacgggataggagaccgtaaa
gcttctttgatgattgctgtccttattaaacaagctggtctgaagcttcaagacaatgtc
attttcctcaatgtcgttggtggatttgagttgacagagactgcaggagatctggcgata
gcagttgcaatttccagcagcttcttggagtttccaatcccgaacaatgttgctttcatt
ggagaggttgggctaggcggcgagcttcgctctgtcccgagaatcgacaagcgattaatg
tctcttgccaaactgggtttcaagaagtgcatcataccagagacagccaataaattgctc
aagtccctgaatctggatatcgaaatcatcagctgcaaaaatttgaaagaagtcatcaac
gttgtgtttagtaaagagtcctaa
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integrated database retrieval system
