Zingiber officinale (ginger): 122015035
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Entry
122015035 CDS
T08725
Name
(RefSeq) DDB1- and CUL4-associated factor 8-like
KO
K11804
DDB1- and CUL4-associated factor 8
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122015035
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
122015035
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
WD40_WDHD1_1st
Beta-prop_EML
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_SPT8
NBCH_WD40
ANAPC4_WD40
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_Vps41
WD40_like
Beta-prop_VPS8
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
122015035
NCBI-ProteinID:
XP_042427606
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Position
8B:18148475..18152864
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AA seq
486 aa
AA seq
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MKKIPTRAADFSPGVLDLWHRELGGFTPQAFARRFGASEDLVMRFRIYRKLDNHRGCVNT
VSFNADGDILISGSDDQKVILWDWDAGYIKLSFDSGHSNNVFHARFMPYTDDRTIVTCAA
DGQVRHAEILQGGKVATTLLTNHVGRAHKLGIEPGSPHTFYSCGEDGVVQHIDLRTKNAT
KLFTCTLDDGEVNHLNAIAINPSSPNLFAIAGTDVYARVYDIRKYKSDGSTDCGYPSNMF
CPLHLIDGDHDTGITGVAFSDQGELLTSYSDEHIYLFTKDHGLGPRADRVFPESSLDVDT
GVGPSLASPLSQSGNQIVPQIFKGHTNCETVKGVGFFGPNCEYVTSGSDCGRVFIWRKRD
GKLLRAMKGDKYAVNCIEAHPCTPVIATSGIENDVKIWTPTALEQSSPVKLEELECKNQK
TRFLRFALPEDMIAQIFALQRMQSRADDNHDPDLRDAIMHLRNRDHSDGDSEDGDTSANP
GDCIVN
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaattcccacaagagcggcggacttcagcccgggcgtcctcgatctctggcac
cgggaactcggcggcttcactccccaagccttcgcccgccgctttggcgcttcggaggac
cttgttatgcgtttccggatctatagaaagttagacaatcatagaggctgtgtcaacacc
gtgagcttcaatgcagatggtgacattctcatttctgggtctgatgatcaaaaggtgatt
ctgtgggattgggatgctggatatatcaaattatcctttgattcaggtcattcaaacaat
gttttccatgctcgattcatgccgtacacagatgatcggaccattgttacatgcgctgca
gatggtcaggttagacatgctgagatactacaaggtggaaaggtggctaccacattgcta
actaatcatgttggtcgagctcataagttaggtattgagccagggagcccccatacgttt
tatagctgtggtgaagacggagtagtccagcatattgatttgagaacaaaaaatgctacc
aagctatttacatgcacattggatgatggtgaagtcaatcatctaaatgctattgcaata
aatccaagcagcccaaatctatttgcaattgctggaacagatgtctatgcacgagtttat
gacattcgcaaatataagtctgatggatcaactgattgtggatatcctagtaatatgttt
tgtccacttcacctcattgatggtgatcatgatactggaattacaggcgtggcattctca
gatcagggtgagctgctgacatcgtacagtgatgagcatatatatcttttcacaaaagat
catgggcttgggccacgtgcagacagagtgtttccggaatctagtttggatgttgatact
ggagttggacctagcttggcttcacctctgtctcaatctggaaatcagattgtacctcag
atcttcaaaggacacactaattgtgagactgtgaaaggtgtgggtttttttggtccaaat
tgtgagtatgttaccagtggttcagactgtgggcgagtttttatttggaggaagagggat
gggaaacttttacgggcaatgaaaggagataaatatgcggtcaattgtattgaggctcat
ccatgtactcctgtcattgcaactagcggcattgagaatgatgtaaagatttggacacca
actgctcttgaacaatcttcacctgttaaattagaggagttagagtgcaagaaccaaaag
actagatttcttcgctttgctcttccagaagatatgatagctcaaatctttgcacttcag
aggatgcaatctagggcagatgacaatcatgatccagacttaagggatgctataatgcat
cttaggaacagagatcattcagatggggatagcgaggatggggatacctcagcgaatcct
ggggactgtatagttaattaa
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