Zingiber officinale (ginger): 122015093
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Entry
122015093 CDS
T08725
Name
(RefSeq) cell division control protein 48 homolog C-like
KO
K14571
ribosome biogenesis ATPase
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122015093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122015093
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
122015093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
AAA_5
RuvB_N
AAA_16
TIP49
AAA_22
RNA_helicase
AAA_2
AAA_17
AAA_33
AAA_18
Nucleolin_bd
AAA_28
Mg_chelatase
NPHP3_N
Parvo_NS1
Rad17
AAA_14
IstB_IS21
Vps4_C
nSTAND3
ABC_tran
AAA_3
NB-ARC
ATPase_2
Bac_DnaA
SKI
Viral_helicase1
NACHT
TsaE
AAA_24
Cytidylate_kin2
TniB
CPT
PduV-EutP
TTC3_9th
Motif
Other DBs
NCBI-GeneID:
122015093
NCBI-ProteinID:
XP_042427710
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All DBs
Position
8B:complement(47444201..47454662)
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AA seq
800 aa
AA seq
DB search
MGKRGRRDFGRSPAAILRRRIASVGVNAEEGVDIDSVVANLRSAYPDYARLKFQTFTRNV
QRTLESLGRKSSASAAHEDSDEDMDDTGIDPASPGISRRTPGRCDPAESRLLRAESEHLR
RRMAVKPDLVDENHSEYSSDDSVFDAKVEPKFDLMKSMLRDGYGKKSNSSKKDDLKSSNK
EELALEVEMEKPTKTTKVQNAIDGSDPGSGAEISIEKENSGSGITDAVMEQRPLFCDLGG
MRDVIEILKRDVLFPLLHPKLVQKLGISRMTGILLHGPPGCGKSKLAQAIANETKLPFYK
IDATEIVSGVSGASEENIRDLFRKAYRTAPSIILIEEIDAIASKRDNQQKGMERRIVIQL
MACMDQSQKSETFDGKSDYVIVIGTTNNPDVLDSALRRCGRFDREIALGVPDENARLEIL
LVLTRNLNLEGQFNLSEIARSTPGFVGSDLASLANQAGNIAMMRMAERKKFQLLLKDKSR
DNWWKEPLDDEEIESGRITMSDFKEALKLVQPSSMREGFSPIPNITWDDVGGLTSLKNKF
EDFIIKRIKYPAVYEEFGVNLEDGILLYGPPGCGKTLVAKAVANAAGANFIHIQGPQLLN
KYVGESELAIRTLFRRARMCSPCIVFFDEVDALACKRGGEGAWVVERQLIQLLVELDGAE
ERKGVFVIAATNRPDVVDPALLRPGRLGNVIYVPLPNSDERLLILKALARKKPILEDVDL
VALAEQCLNFNGADLASLMNGAASAATGEKLDCIDRGINITKPAMIKMSHFEHVLQTIKP
SVSMQERIYYEQLSKNFKVN
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagcgaggaaggcgggacttcggccgttcccctgccgcgatcctccgtcgacgc
atcgcttccgtcggcgtcaacgccgaagaaggggtagatattgactctgtcgtcgccaac
ctccgctctgcctatcctgattacgcccgtctcaaattccaaacgtttacccgcaatgta
cagagaaccctagaatctctcggccgcaagagctccgcctccgccgcacatgaagatagc
gatgaagacatggacgataccggaattgatcctgcgagtcccggtatttctcgcaggaca
cccggacgttgtgacccggccgagagccggcttcttcgcgctgagtctgagcacctccgc
cgtcggatggctgtgaagccagatttggttgatgaaaatcatagcgaatactcctccgac
gattctgtcttcgacgccaaggtagagccgaagtttgatctgatgaagtccatgcttcgg
gatggctatggaaaaaaatccaactcatcaaaaaaagatgatctcaagtcgtcaaacaag
gaagaactggctttggaagtggagatggagaagccgacgaagacgacgaaggtgcagaat
gctattgacggaagtgatccagggagtggggctgagatctctattgagaaggagaatagt
ggcagtggaataacggatgctgtgatggaacaaaggccactattttgtgatcttggtggt
atgagggatgtcattgagattttgaaaagagatgtgttatttcctctgcttcatccaaag
ctggtacaaaagctgggaatttcacgaatgactggaattctcttacacggaccacctggt
tgtgggaagtcaaaacttgcacaagccatagctaatgagacaaaattgccattctacaag
atcgatgcaactgaaattgtatctggagtctctggtgcctctgaggagaatatacgagat
cttttccgcaaggcatatcgaactgctccctcaataattctcattgaagagatagatgcc
attgcctctaagagggacaaccaacagaaggggatggagcgtcggatagtaattcagcta
atggcttgtatggatcagtcacaaaaatcagaaacatttgatgggaagtctgattatgtt
attgttattggcactactaataatcctgatgttctagactctgcattgagaagatgtgga
cgatttgatcgtgagattgctttgggtgtccctgatgaaaacgcaaggcttgaaattttg
ttagttctcactcgtaatctaaatcttgaaggccaattcaatctctctgaaatagctcga
tccacaccaggttttgtagggtctgatctggcttcattagctaatcaagcaggtaacata
gcaatgatgcgtatggcagagagaaaaaagtttcaacttttattaaaggataaaagcaga
gataattggtggaaagaacctctcgatgatgaagaaattgagagtggcaggattacaatg
tcagactttaaggaagcattgaagttggttcaaccttcttccatgagagaaggattttcc
ccaatacccaacattacatgggacgatgttggtggccttacttcattaaaaaacaaattt
gaggattttataattaaacgtataaaataccctgcggtttatgaggaatttggagttaat
ttggaggatggaattttattgtatgggcctccaggttgtggtaaaacattagttgccaag
gctgtagcaaatgcagcaggagccaattttattcacatacagggtcctcaattgcttaac
aaatatgttggtgaaagtgagttggcaataagaacattatttcgtcgtgctcggatgtgt
tctccctgtatagttttctttgatgaggtggatgctttggcatgcaagcgtgggggagag
ggtgcatgggttgtcgaacgacaattaatccagctacttgttgagctagatggcgctgaa
gaacgaaaaggtgtatttgtcattgcagcgacaaacagacctgatgttgtggatcctgct
ctactaagaccaggaaggttaggtaatgtcatatatgttccattgcccaattccgacgaa
cgactactaatactgaaggcacttgctcgaaagaagcctattttagaagatgtagatttg
gttgctcttgcagaacaatgtttaaatttcaatggtgctgatctagcttctttgatgaat
ggagctgcctcggctgccactggagagaagctggattgcatagaccggggtattaatatt
acaaaacccgccatgatcaagatgtcacactttgagcacgtgctacagacaatcaagcca
tctgtctctatgcaggaaaggatatattatgagcagttatcgaaaaacttcaaagttaac
tga
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