Zingiber officinale (ginger): 122015153
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Entry
122015153 CDS
T08725
Name
(RefSeq) crossover junction endonuclease EME1B-like
KO
K10882
crossover junction endonuclease EME1 [EC:3.1.22.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03440
Homologous recombination
zof03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122015153
03460 Fanconi anemia pathway
122015153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
122015153
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
122015153
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EME1-MUS81_C
ERCC4
Motif
Other DBs
NCBI-GeneID:
122015153
NCBI-ProteinID:
XP_042427827
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All DBs
Position
8B:complement(57702700..57713520)
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AA seq
647 aa
AA seq
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MGLYVGLRQFVLVIWRLRSSKRQNFPQFPTPTPRLRTAVMDGRPPTACTIDIISDEDENE
DSSLQGPPNKASKMDGEGHRRGRPPLTVVVIDDGVTPQKENPVRTTYFIPETPMSPGKPF
DSDPSIVKCSLTRAKVANDSSEFSGVGRLICLESDNESELDVPLITTKKSGTDIIASTSY
ENSQVHLSSQRVEEPKGSGVIQDCFPMYDLVLDNYNNNDKDLMKHGRDGIMDDNNETQII
GESPPDIDNIVEQTPFQTGQDSCCQGMYNKENITVIENQEGFGKTHQRTEAEGRKGQLKE
KKLHLREERKRLKQQEKLQKEALKTEAAEAKKLEKERQKWEKGKFALKSMMAEIDAKIIE
NGSVGGLLLTRFAEKGLSFRITSNPIQRSILWKINAPDHITELSLLGSDVPYILLVHQAE
EFCDLVSNGSLFANIQIVQNKYPGFTICYLTNKLMSYIKKCEQAQYKNPSNVCNWRRPPV
EEVLSKLVTHYSEVHSRDCIDEAEVAETIVGLTFSLANCQFRKKPTWLSVHANGTIIPKD
FIDRKLIKGSVWLKALIAIPKVQPRYAVAIWKKYPTMRSLLNVYMDPTKSVHEKEFLLKD
LMIEGALGTEVRRLGDVCSKRVYRILMAQNGGIETDDVEQGADSFHP
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgggcctttatgtgggcttacggcaattcgttcttgtaatctggagacttcgaagttcg
aagcgccaaaactttccccaattccccactccgactcctcgcttgcgcaccgccgtgatg
gatggccgaccgccgaccgcctgcaccatcgatatcatctccgacgaagatgaaaacgaa
gactcatccttgcagggccctccaaataaggcgtcgaagatggatggagaggggcacaga
cggggaaggccgcctttaaccgtcgtcgtcatcgacgacggcgtaactccgcaaaaagag
aatccagttcgcacgacctatttcatcccggagacgcctatgtctcctggaaagcccttc
gattccgatccttccattgtcaaatgcagccttactcgtgccaaagtagccaacgactcg
tcagaattttctggagttgggcgtttgatatgcttggagtcagataatgaatctgaactt
gatgtacctttgataactacaaagaaatcagggacagatatcattgcatcaacatcatat
gagaactctcaggtacacttaagctctcagagagttgaagaaccgaaaggttcaggggta
atacaggattgcttccccatgtatgacctagttcttgacaattataataacaatgataaa
gatcttatgaagcatggcagagatggaataatggatgacaacaatgagacacagattatt
ggagagagcccaccagatattgacaacattgttgaacaaactccattccagactggacaa
gacagttgctgtcagggcatgtacaataaggaaaatatcactgtgatagagaatcaagag
ggttttgggaaaacacaccaaagaactgaggctgaaggaagaaaggggcaacttaaggaa
aagaagcttcatttacgcgaagaacgaaaacgactaaagcagcaagaaaaattacagaaa
gaagctcttaaaactgaagcagccgaggcaaagaaattggagaaggagaggcaaaaatgg
gaaaaaggaaaatttgcactgaaatccatgatggctgagattgatgctaaaatcattgaa
aatgggtcagttggtggccttcttttgacgaggtttgctgaaaaaggtctctcttttcgc
ataacctcaaatccaattcaaagatcaattttatggaagattaatgcacctgatcatatc
acagagctttcacttcttggatcagacgtgccatacatactcctagtgcatcaggcagag
gaattctgtgaccttgtgtctaatggatccctttttgccaatatccagatagttcaaaat
aagtatccaggtttcacaatatgttatctcaccaacaaactaatgagttacatcaagaaa
tgtgaacaggctcaatacaaaaatccatcaaatgtctgtaactggagacgcccacctgtt
gaggaggttctatcgaaattggtaactcattactcagaagttcactccagggattgcata
gatgaagcagaagtagcagaaaccattgttggcttaacattcagcctcgctaattgtcaa
tttagaaagaagccgacttggttgtctgtacatgctaatgggaccattattcccaaggat
ttcattgacaggaagttgatcaaaggaagtgtctggcttaaagctttgatagccattccg
aaggttcaaccgaggtatgccgttgccatttggaagaaatatccaactatgagatcccta
ttgaacgtgtatatggatccaactaagtcggtacacgagaaggaatttctgctcaaagat
ctaatgatagagggagcactgggcacggaagtaaggcggcttggcgatgtttgttcgaag
agagtgtacaggatactcatggctcagaatggaggaatagaaactgatgatgtcgagcaa
ggtgctgattctttccacccttga
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