Zingiber officinale (ginger): 122015215
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Entry
122015215 CDS
T08725
Name
(RefSeq) mRNA-decapping enzyme-like protein
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122015215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122015215
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122015215
mRNA degradation factors
5'-3' decay
Decapping complex
122015215
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
Motif
Other DBs
NCBI-GeneID:
122015215
NCBI-ProteinID:
XP_042427914
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All DBs
Position
8B:complement(15133749..15143497)
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AA seq
362 aa
AA seq
DB search
MAQNGKLLPNLDQNSTKVLNLTVLQRIDPFVEEILMTAAHVTLYEFNVELNQWSRKDVEG
SLFVVKRNTQPRFQFIVMNRRNTDNLVEDLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNS
PDCEAVTNLFSRILNAYSKVPPKPKVSSKSEFEELEAVPTSSVIEGPLEPTTSTAPTPTV
PDDVCMNFFSNAMNIGNTSNATIGGQPPLPSAPVPVATHASSLIPTVLPTTQSIPIPSAS
AAPLMPPLDNLESGNGSSSWATNLLKPSFFSPVLSSAPPVPPVSSSVPITPPLHPPVTMQ
RPYGTPLLQPFPPPAPSASLTPGPNFAPFIMRDKVRDALTRLVQNNDFIDLIYREMLNAH
YS
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagaacgggaagctgctgccgaatctcgaccagaacagcaccaaggtcctcaac
cttaccgttcttcagcgcatcgatcctttcgtggaagagatcctcatgaccgccgcacat
gtcactctctacgagttcaacgtcgagctcaaccagtggagccgtaaagatgttgaaggg
tccttattcgtcgtcaagagaaatacacagcccagatttcagttcatcgtgatgaataga
cgtaacacggataatctagttgaggatcttttgggagatttcgagtatgaagtccaggtt
ccttatcttttatacagaaatgctgctcaagaagtcaatggcatatggttttataattca
ccagattgtgaagcagtgacaaaccttttcagcaggatattgaatgcctattcaaaagta
cctccaaaacctaaggtatcttctaaaagtgaatttgaggagcttgaagctgtacctacc
tcatcagttattgaaggtccacttgaaccaacaacatcaactgcgccaactcctactgtt
cctgatgatgtttgtatgaactttttcagtaatgcaatgaacataggaaacacatcaaat
gcaacaattggtggccagccacctcttccttctgcacctgttcctgtagctactcatgct
tcaagtctcattccaactgtattgccaactactcagtcaattcccattccctcagcttca
gctgctcctctaatgccacctttggataatcttgaatctggcaatggaagtagcagttgg
gctacaaatctattgaaaccttcatttttctcgcccgttttgtcttctgcaccaccagtg
cctccagtttcatcctcagttccaattactcctcccctccatcctccagttacaatgcag
cgaccatatggaactccattacttcaaccatttccaccacctgcgccatctgcatctctc
actcccggtccaaactttgcaccatttatcatgagagacaaagtccgagatgcattaacg
aggcttgttcagaataatgatttcatcgacctcatttatcgggagatgctgaatgcacat
tattcgtga
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