Zingiber officinale (ginger): 122015266
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Entry
122015266 CDS
T08725
Name
(RefSeq) DNA repair and recombination protein RAD54-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122015266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
122015266
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
122015266
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
SLFN-g3_helicase
Ribosom_S30AE_C
Motif
Other DBs
NCBI-GeneID:
122015266
NCBI-ProteinID:
XP_042427998
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All DBs
Position
8B:36735579..36753536
Genome browser
AA seq
934 aa
AA seq
DB search
MASKQEEEGEEEEEREGEEFASSDSERGEEGSDYEEQDDEEIEQEGDEPEENQACSSESP
SSDQDRKSQNVAALLRGNLHVRRQPLIPRILSVSDGAAVARKPFKPPCSKRYKDQNDELS
RRLWARKRFVPWGSSAPRRPLVAIDYIQHPPSINSDDPEREDQLLPPGIEPLILWQADGT
DKTNDLPQIEVDALLVRYLRPHQREGVQFMFECVSGLSGSDGVSGCILADDMGLGKTLQS
ITLLYTLLRQGFDGKPMVKRAMIVTPTSLVSNWESEIDKWIGRKIRVVALCETTRADVLS
GIESFLNPCSAFQVLIISYETFRMHSSKFDKNGSCDLLICDEAHRLKNDQTLTNRALGAL
PCLRRVLLSGTPMQNDLEEFFAMVNFTNPGILGDASYFRRYYEAPIISGREPTATLGERK
LGIERSAELSAKVNQFILRRTNTLLSNHLPPKIIEVVCCRLTPLQLELYNHFIQSKNVKR
VISEEMKQSKILAYITALKKLCNHPKLIYDSIKSDKSGTSGFSDCIRFFPPELFSGRSGT
WTGGAGVWVELSGKMHVLARLLGHLRQKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRL
DGTTSIGKRQKLVNYFNDPSKDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQA
AARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQKEQAESEMPQGNFFSAE
DLRDLFTFHENVRSEIHENMNCARCKKEPTAMDRTSNEIELDNLGGSCEGKEQPNVAVND
IGGFAQVAGCSHKLQSSQRQLGTPSEEDLGSWGHHPDPATVPDAILQLSAGDEVAFVFTN
QVDGKLVPVESASRSQNQNQTYGNLMVSANFKQQNQNTRQKSLATVGTTVSWESKSIRRT
LPKLHAIEKPNASFGGLSSLKRTPTSALSDDDFT
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaaacaagaagaagaaggggaagaagaagaagagagagaaggggaagagttc
gcatcttccgactccgagcgaggcgaggaaggatctgattacgaagagcaagatgatgaa
gaaatcgaacaagaaggcgacgaacccgaggagaaccaagcgtgctcctctgagtctccc
tcgtccgatcaggataggaagtcccagaacgttgccgcccttttgagaggaaatcttcat
gtaagaaggcagccacttattccacgaattctctctgtctctgatggagcagcagtggct
agaaaaccatttaagccaccgtgctccaaaagatacaaggatcaaaatgatgaactatct
cgacggctttgggctcgtaaaaggtttgttccatggggttcatcagcaccaaggagacca
ttggtagccattgactacattcagcatccacctagcattaatagtgatgatcctgaaaga
gaagatcagcttctgccacctgggatagagcctttaattttatggcaggcagatggaaca
gacaaaacaaatgatttacctcaaattgaggtagatgccttacttgttcgctatcttcgt
cctcatcaaagggaaggagttcaatttatgtttgaatgtgtgtctgggttatctggttct
gatggtgtctctggttgcattctggccgatgacatgggtttgggtaagacactgcaatca
ataactttattgtatacactccttcgtcaaggctttgatgggaaaccaatggttaagcgt
gcaatgattgttactcccacaagccttgttagcaattgggaatcagagattgataagtgg
attggacgaaaaattagagttgttgctctctgcgaaactacacgagccgatgttctatcc
gggattgaaagtttcctaaacccttgcagtgcttttcaggtgcttatcatatcttatgag
acattcagaatgcattcgtcaaagtttgataaaaatggaagttgtgatcttcttatatgt
gatgaagctcacaggcttaagaatgatcagacgctaactaatagagcattgggtgctctt
ccttgtttaaggcgtgtcctattgtcaggaacaccaatgcagaatgatcttgaagaattt
tttgccatggtaaactttacaaatccaggaattctaggagatgcttcatatttccgacga
tactatgaggcaccaataatttctggacgagagccaacagcaactctaggagaaaggaag
ttgggtattgagagatcagcagaactgagtgcaaaagtaaatcagtttatacttagaagg
acaaacacattgttgtcaaatcacttaccacctaagataattgaagtggtatgctgtcga
ttgactcctctgcaacttgaactctacaaccattttattcaatcaaaaaatgttaagaga
gtcatatctgaagagatgaagcaatccaaaattttagcatatataactgctctaaagaag
ttatgcaatcatccaaagctcatatatgattctatcaaaagtgataaatcaggaacatca
ggattcagtgactgcatacgattttttcctcctgaattattttctggaagatctggcacc
tggactggtggtgctggagtatgggtggagctatctggaaaaatgcatgtcctggcacga
ctacttggacatcttcgtcaaaagacagatgacagaatcgttcttgtatccaactatact
cagacattggatctctttgctcaattgtgccgggaaaggcggtacccctttttgaggctt
gatggaactacatccattggaaaaaggcagaagctggtcaattattttaacgatccatct
aaggatgagtttgcattccttctaagcagcaaagctggtggctgtggacttaatttgatt
ggcggaaatcgtctggttctttttgatccagattggaatcctgctaatgacaaacaggct
gcagcaagagtgtggagggatggacaaaagaagcgagtctatatctatcgattcttaagt
acaggaaccatagaagaaaaggtgtaccagcgtcaaatgtcgaaggaaggacttcagaaa
gttattcagaaggagcaagcagaaagtgagatgccacaagggaactttttctctgcagaa
gacctgcgtgatctttttacttttcatgaaaatgtcaggtctgagattcatgaaaacatg
aattgtgcgcgttgcaagaaagagccaacagcaatggacagaacttcgaatgagatagag
ttagataatcttgggggctcatgtgaaggaaaagagcagcccaatgttgcggtgaatgat
attggtggatttgctcaagttgctggatgttcacataaattgcaaagctcacagcgacag
ctcggaaccccatccgaagaagatttgggaagctggggccatcacccagacccagcaact
gtacctgatgcaattcttcaattgtcagctggtgatgaggtggcatttgtatttactaat
caggtggatggaaagcttgttcctgttgaatctgcatcaagatcccaaaaccagaaccaa
acctatgggaacttaatggtgtctgcaaactttaaacaacaaaaccaaaacactcgccaa
aagagtttagcgactgtaggcaccaccgtgtcgtgggagtcaaagtcgataagaagaaca
ttgcccaaattacatgcgattgagaagcctaatgcttcttttggcggtctatcctccctc
aaaaggacacctacctctgctttgtctgacgatgatttcacttaa
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