Zingiber officinale (ginger): 122015269
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Entry
122015269 CDS
T08725
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03030
DNA replication
zof03420
Nucleotide excision repair
zof03430
Mismatch repair
zof03440
Homologous recombination
zof03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122015269
03420 Nucleotide excision repair
122015269
03430 Mismatch repair
122015269
03440 Homologous recombination
122015269
03460 Fanconi anemia pathway
122015269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
122015269
03032 DNA replication proteins [BR:
zof03032
]
122015269
03400 DNA repair and recombination proteins [BR:
zof03400
]
122015269
Transcription factors [BR:
zof03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
122015269
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
122015269
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
122015269
MMR (mismatch excision repair)
122015269
DSBR (double strand breaks repair)
HR (homologous recombination)
122015269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
zf-CCHC_3
zf-CCHC_2
CDC24_OB3
DUF223
zf-CCHC_5
zf-CCHC_6
Motif
Other DBs
NCBI-GeneID:
122015269
NCBI-ProteinID:
XP_042428002
LinkDB
All DBs
Position
8B:complement(28022272..28026202)
Genome browser
AA seq
864 aa
AA seq
DB search
MTAVDLTRGAIAAVSEGRAEEGAKPVVQVWDLRLVNTQQNTTERYRMLLSDGAHIQQAML
ATQMNGLVKSGTLQKYSIVQLNEFICNVIQNRTIIIVINLEVLISNSSAIGEPKMYENGA
ATQIRAPLPGQSLGPDHPVTAAANPQTHGMRSSTPITGHNVSGGASLHPKTDPMANSPSI
GANYGSSPVLGRNMSGGKTDTEHPKAEQGIGRFSESHSYGSNQNQRSDPTSAGPFRPPAS
SYGRPPPQQPPPMYSNKGPIARNEAPARIIPIAALNPYQGRWTIKARVTAKGDLRRYNNP
RGEGKVFSFDLLDSDGGEVRCTCFNAVADQFYDQIEVGKVYLISKGSLKPAQKNFNHLNN
EYEIFIESQSVIQPCLEEDSTIPKQQFNFRPINEIEGLENNSTIDIIGIVTSINPLVSIM
RKNGTETNKQTLQLKDMSGRSVEVTLWGNFCGMEGKQLQSMCDSGVNPILAIKAGRVSDF
SGKSINTINSSQLFINPDFMEAHRLREWYNREGKTMTAPSISRDTATMGRTDVRKTVAQI
KDEGLGRSEKPDWITVKATVTFIKVDNFCYTACPLLVGDRPCNKKVNNNGDGTWHCDRCD
QRFPECDYRYLLQFQIQDHTGMAWVTAFQECGEEILGVTAKELYLLKYEEQDDLKFAEII
RTVIFHQYVFKLKVKEETFSDEQRVKSTVVKAERVNPSSESRYLLGLIERLSTEDPNAST
AVPGTFAPTFGIPNSSNDPVELNCNIYSANNNYSAFHNADGYRTGAPTNQSVQYANDYGG
TIKQSFSRNEAQLQCNNCGGHGHSFQNCPIGTSRPAQSVSGGYSSAGSNVCFKCHQPGHW
ASECPSVGAATSSYRGSGTSGRLI
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgactgcggtcgatctgacgcggggggcgatcgcggcggtatcggaggggcgtgcggag
gagggcgccaagccggtggtgcaggtttgggatttgaggctggtgaacacccaacagaac
acgacggagaggtaccggatgttgctgtccgatggggctcatatacagcaggccatgctc
gcgacgcaaatgaatggtctcgtcaagtcggggacgctccagaagtactccatcgtccag
ctcaatgagttcatctgcaacgtcatccagaaccgcacaatcatcattgtcatcaacctg
gaagtccttatcagtaatagcagcgctataggagaacccaaaatgtatgaaaatggcgct
gctacacaaatccgtgctccactgcctggtcagtcgctgggtccagatcatccagttaca
gctgcagctaatccccaaactcatggtatgcgctcctctactcccatcactgggcacaat
gtttctggtggagcttctttgcatccgaagactgatcctatggcaaatagcccatctatc
ggtgctaattatggcagcagtcctgtgttgggcaggaatatgagtggtgggaaaactgat
actgaacaccccaaagctgaacagggtatagggcggttctctgagtcacattcatatggt
agtaaccagaaccagaggtctgatccaacatcagctggaccatttcgtccccctgccagt
tcttatgggcgtcctcctcctcagcagcccccaccaatgtactcaaataaggggcctata
gccagaaatgaagctcctgctcgaattatcccaattgctgctttgaatccttaccagggt
agatggacaattaaggcaagagtgacagccaagggtgaccttaggcgctataataatcct
agaggagaaggaaaagtcttctcgtttgatctgctggattctgacggtggagaagtacgt
tgcacttgctttaatgccgtagctgatcagttctatgatcagattgaggttgggaaagtt
tacctgatttctaaaggtagtttgaagcctgcacagaagaactttaatcatctgaacaat
gaatatgaaatctttatagaatctcaatcagttattcagccttgtttagaggaagattct
accattccgaagcaacagttcaactttcgtcccataaatgaaattgaaggcttggaaaac
aattcaacgatcgatatcattggcattgtgacttcaattaatcctttggtttccattatg
aggaaaaatggcacagaaactaataagcaaactcttcagttgaaggacatgtctggccgt
agtgtcgaggtgactttgtggggaaatttttgtggcatggagggtaagcagctgcaaagt
atgtgtgactctggtgtgaatcctatattggcgattaaagctggtcgagttagtgatttt
agtggaaagtctattaatactattaattcaagtcaactgttcataaatcctgattttatg
gaggctcatagattgagagaatggtataatagagaaggtaagactatgactgctccttca
atatctagagacacggccaccatgggtagaactgatgttcggaagacagttgcacagatc
aaggacgagggattgggaagatcggaaaaacctgactggataacagttaaggcaacagtt
acattcataaaagtcgataatttctgctatacggcatgtccattactggtaggggacagg
ccatgcaataaaaaggttaacaacaacggcgatggcacttggcactgtgatcgctgcgac
cagagatttcctgagtgtgactataggtacctgctccagtttcagatccaggaccataca
ggtatggcatgggttacagctttccaagaatgtggggaggagattttgggagtcactgcc
aaggaactttacttgttgaaatacgaggaacaagatgacttgaagtttgcagaaattatt
cgaacagtgatcttccatcaatacgtattcaagttgaaagtaaaagaggagacattcagt
gatgaacaacgtgtgaaatcaactgttgtcaaagccgaaagagtaaatccatcctctgag
agcaggtaccttttgggtctgattgagaggctctcaactgaagaccccaatgcatccaca
gcggtacctggaacttttgctccaacctttggaattcccaactcttcaaatgaccccgta
gagttgaattgtaatatctattctgctaacaataactatagcgcctttcacaatgctgat
ggatatagaactggagcaccaacaaatcaatcagtgcagtatgcaaatgactatggtgga
accatcaagcaaagtttcagccgaaacgaagctcaactacaatgcaacaactgtggtggc
catggccacagtttccagaattgtccaatcggcacaagccggccagcccaatcggtcagt
ggtggatactctagtgctggctcaaatgtttgcttcaagtgccatcaacctgggcactgg
gcgagtgaatgtcccagtgtaggagctgctacatcatcatataggggttctggcacatca
ggaagattaatatag
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integrated database retrieval system
