Zingiber officinale (ginger): 122015301
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Entry
122015301 CDS
T08725
Name
(RefSeq) ubiquitin domain-containing protein DSK2b-like
KO
K04523
ubiquilin
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122015301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
122015301
03051 Proteasome [BR:
zof03051
]
122015301
Membrane trafficking [BR:
zof04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
122015301
Proteasome [BR:
zof03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
122015301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBQLN1
ubiquitin
UBA
Rad60-SLD
UBA_7
Ubiquitin_2
Dsc3_N
XPC-binding
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
122015301
NCBI-ProteinID:
XP_042428052
LinkDB
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Position
8B:7590055..7595160
Genome browser
AA seq
538 aa
AA seq
DB search
MATDGDPGVSADPGAVGEADAVTIHVRSSNGSKLSVRASLECTVGAFKVLLEEKSDVPAE
RQRLIYKGQILKDEKTLMSYGLESDHTIHLVHGLTLQNPPSDVTPAANRVSGVESGGSNG
GGGFGGADVASSLFPGIGSNIRNGAGSGMLGFGLPDLSQMQQQLVQNPSMMREMMNMPAV
QSLINNPDLMRNMIMNNPQMREIIDRNPEFAHILNDPSTLRQSLEVMRNPELMRELMRST
DRAMSNIESSPEGFNMLRRMYETVQEPFLNATAGAGNEGNDVGQNPFAALLGNQGGVQSR
DLTPDQPGTGSNQTSESSSPNSNPLPNPWSRTGVQTTNTTPAPPHDGRSPSIGGLSGLER
MAGGLTDPSFVNQLLQNPAIMQMTQSLLSDPQFMNQVLNPQLRNLLGSNSQLSSMLQNPE
LIQQLTSPETLQQLLSFQQTLLSPGGQRQTSQEQNQTGATATGAINTSGLEFMMNMLSGL
GSGMGAPNPDVPLEERYATQLSQLQEMGFSDTQENIRALEATAGNVHAAVDWLLRSPH
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgacggcgatcctggtgtctccgccgacccgggcgccgtcggcgaggctgat
gcagtcactatccatgtccgatcctccaacgggtccaaactctcggtgcgggcctcactc
gagtgcacggtaggggccttcaaggttctcctggaggagaagtccgatgtcccggcggag
cggcagcggttgatttacaaaggccagattttgaaggacgaaaaaaccctaatgagctat
ggcttggagtcagatcacacaattcatttggttcatggtttgaccctgcaaaatccacct
tccgatgtgactccagctgctaatagagtttcaggagttgagagtggtggttctaatgga
ggtgggggatttggaggagctgatgttgcaagctcgctctttcctggcattggtagtaac
attagaaatggtgctggatcaggcatgcttggatttggcttaccagatctcagtcagatg
cagcagcagttagtgcaaaatccaagcatgatgagggaaatgatgaatatgcctgctgtt
cagagtctgataaataatcctgacctgatgcgaaacatgataatgaacaatcctcaaatg
cgtgagatcattgaccgtaatcctgagttcgcgcacatcctaaacgaccccagcactctt
cggcaatctctggaagtcatgaggaatcctgaactcatgagagaattgatgcggagcact
gatagagctatgagcaacattgagtcatccccagaaggattcaacatgcttaggcgaatg
tatgaaactgtccaggagccgtttcttaatgctacagcaggggcaggaaacgaggggaat
gatgtgggtcaaaatccatttgcagcacttttggggaatcagggtggtgtgcagtctaga
gatctgacaccagaccagcctggtactggttccaatcaaactagtgaatcatcttcacca
aatagtaacccacttccaaacccatggagcagaactggagtgcagacaaccaataccaca
ccagctcctcctcatgatggaagatctccaagcattggtggattatcagggttagaaagg
atggctggtggattgacagacccatcctttgtcaatcaacttctgcaaaacccagccatt
atgcagatgacgcagagtctcctctccgaccctcagtttatgaatcaggttctgaatcca
caactccgtaacttgttgggttccaactctcagcttagcagtatgttacagaatccagaa
ttaattcagcagcttacttctcctgagacactgcagcaacttctatcatttcagcagaca
cttttatccccaggtggccagcggcaaacaagccaggaacaaaatcagactggtgccact
gcaacaggagcgatcaataccagtggcttagaatttatgatgaatatgcttagtggactt
gggtctggcatgggggctcctaaccctgatgtgcctcttgaggaacgatatgcaacacag
ctttctcagctacaagaaatgggcttctctgacactcaagaaaacattcgcgcattagaa
gccactgctggaaacgtccatgctgcagttgattggcttttgaggagccctcattga
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