Zingiber officinale (ginger): 122015344
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Entry
122015344 CDS
T08725
Name
(RefSeq) RNA polymerase I-specific transcription initiation factor rrn3-like
KO
K15216
RNA polymerase I-specific transcription initiation factor RRN3
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122015344
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
Transcription initiation factors
122015344
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SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRN3
Motif
Other DBs
NCBI-GeneID:
122015344
NCBI-ProteinID:
XP_042428117
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Position
8B:complement(51940620..51948330)
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AA seq
642 aa
AA seq
DB search
MGVEPQGNGFSVDGAEEGFISDSEAFASVINVLDGVRMAPSLVAQVDKEQYYYLVSVVNP
GRKIGPVDEALTVTALKALTRAVFKIDIMYHGALLNNIFLTSIWDYDLETRNAFLELITT
MATLPDKFLENCLHVLLCNFRPPNWLKAPFCHSKRWLMRKKEVHSELHLALHCITTLVPL
APVRLKCLIEKLMSRVTEDKYIMVTYVEGLLGLEKNEIGKFLGSTVMAKVVDLLTDLDVN
IPWEDILQEEQNKSVFVIELGDSNQDDEHSSIKQNGVLKCNVFADKLDGLMVVVCDHLKS
CADTGCLLEGFDRLSEIFRRAVLKLHKSKFTQFLIFYACSLDPDTCGLKFAILLTDIFVS
KDEDPDSRMKAVAYLASYLSRAKFISSSLVTSILQRLVDWCFEYCQLQESREKMISPQAD
RIFYSGCQAVMYILCFRLRSISDVPHLKQLLFHLPLDSILCHPTLDPLKVCLPLIVQEFL
RQASAARLFKKPMPYFYDDSFESEFSKAFGGIERLDMFFPFDPYLLKESDRFMRPNFEFW
DNVRTTYSNFDGDEVDDELEDLDVPNFPDDAGGYEVHNDIDFDNEDDIELPMSKMSITPK
PSFLHPIATNFSQPSLMPARIRPSQSPPSPRQGILSRREWRG
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgggggtggaaccacaaggaaacggattttctgtagatggtgcagaggaggggttcatc
agtgattctgaggcttttgcttctgttataaatgttctcgatggtgttcggatggctcca
tctttagttgctcaggttgataaggagcagtactattacctggtttctgtggtgaatcct
ggaaggaaaattggaccagttgatgaagctttaacagtgacagcattgaaggcactaaca
agagccgtcttcaagatagacattatgtaccatggcgctctattaaataatatttttcta
acatccatatgggactatgatttggagacaaggaatgcattcttggaattgatcactaca
atggctacactacctgataaatttcttgaaaattgcttacatgtgcttttgtgtaacttt
cgcccacccaattggctaaaggcgccattttgtcactcaaaaagatggcttatgagaaag
aaagaagttcatagcgaacttcatttggcattgcattgtattactactttagtacctctt
gctccagtgaggctgaaatgtttaattgaaaaactgatgtccagagtcactgaagataaa
tatattatggtaacttatgtggagggtttgcttggactagaaaaaaatgaaattggaaaa
ttccttggaagcacagtaatggcaaaagtagtagatttgctcacagacttggatgtaaac
ataccttgggaagacattctacaggaagaacagaacaaaagtgtatttgtgattgaactt
ggagattctaatcaagatgatgagcattcttccatcaaacaaaatggagttttaaagtgc
aatgtttttgccgacaaattggatggcttgatggtggtagtttgtgaccatcttaaatcc
tgtgcagacactggttgtttattagagggatttgataggctctcagaaatctttcgaagg
gcggtgctaaaacttcacaagtcaaaatttactcagttcctgatattttatgcttgttcg
ttggatcctgacacatgcggtttgaaatttgctattctactaacagatatttttgtttca
aaagatgaagatccagattccagaatgaaggccgttgcgtatcttgcaagttatctatcc
cgtgctaagtttatttcttcttccctggtcacaagtatacttcaaagattggtcgattgg
tgttttgagtattgtcaattgcaagagagtcgggaaaaaatgatcagccctcaagcagac
cgaatcttttattctggatgtcaggctgtgatgtacattctatgttttcgattgcgatca
atctcagatgttcctcacctgaagcagctgctctttcacctgccactggattctatcctg
tgccatccaaccttggatcctcttaaggtgtgtttgcccttgatcgttcaagagttcctc
agacaagcaagtgctgcccggttgtttaagaaacccatgccttatttctacgacgactcg
tttgaatctgaattctcaaaggcttttggaggaatcgagcgtttggacatgttcttccca
ttcgatccatatcttcttaaagaatccgacagatttatgcgccccaattttgagttctgg
gacaatgtgaggacaacatacagcaacttcgacggcgacgaagtggatgatgagcttgag
gaccttgatgttcccaatttccctgatgatgcagggggctacgaagtgcataacgatatt
gactttgacaatgaagatgacatcgaactaccgatgagcaaaatgtcaatcaccccaaag
cctagctttctgcacccgatagccaccaacttcagccagccttcgctgatgcccgcaaga
ataagaccgtctcaaagccctccatcacctcgacaagggattttatccaggagggagtgg
aggggttga
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