KEGG   Zingiber officinale (ginger): 122015448
Entry
122015448         CDS       T08725                                 
Name
(RefSeq) histone deacetylase 1-like isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03082  ATP-dependent chromatin remodeling
zof03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    122015448
   03083 Polycomb repressive complex
    122015448
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:zof03036]
    122015448
Enzymes [BR:zof01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     122015448
Chromosome and associated proteins [BR:zof03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     122015448
   HDAC complexes
    Sin3A-HDAC complex
     122015448
    BRAF-HDAC complex
     122015448
    REST complex
     122015448
    SHIP complex
     122015448
    MiDAC complex
     122015448
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     122015448
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    122015448
  Chromatin remodeling factors
   NuRD complex
    122015448
SSDB
Motif
Pfam: Hist_deacetyl Enkurin
Other DBs
NCBI-GeneID: 122015448
NCBI-ProteinID: XP_042428258
LinkDB
Position
8B:complement(12343859..12351065)
AA seq 517 aa
MESAGGNSLPGVGPDSKKRKVCYFYDTEIGNYYYGQGHPMKPHRIRMTHSLLAHYGLLGH
MQVYKPNPARDRDLCRFHADDYVAFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLYSFC
QAYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKRHERVL
YVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYGKGKYYSLNVPLDDG
IDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRYMRSF
NVPLLMLGGGGYTIRNVARCWCYETGVALGVEVDDKMPPNEYFEYFGPDYTLHVAPSNME
NKNSHRQLDDIRAKLLDNLSKIQHAPSVQFQERPPDTELPEPDEDHEDPDQQHDPDSDME
IDDSKLPDDSSRKPFSNSTPSMRIKKENLETDLKDQEAQNKVAGDHGKSVEPMAEFSAPK
VASDINSMEVDEPGTLKNEQDNHHKSSDAPAFMYQKS
NT seq 1554 nt   +upstreamnt  +downstreamnt
atggagtccgccggcgggaattcgcttcctggcgtcggtccggattcgaagaagcggaag
gtttgctacttctacgacacggaaatcggcaactactactacgggcaggggcacccgatg
aagccgcatcgcatccggatgactcattcccttctcgcccactacggccttctcgggcac
atgcaagtctacaagcccaatcctgctcgggaccgcgatctctgccgcttccacgccgac
gattacgttgccttcctccggtccgtcactcccgaaactcagcaggaccagatccgtgcg
ctgaagcgcttcaacgttggcgaggactgccccgtcttcgatggtctctactccttctgc
caggcctacgcaggcggctccgtcggtggtgccgttaagctcaatcacggacatgatatc
gccatcaactgggccggcgggcttcaccacgctaagaagtgtgaagcctctggattctgc
tacgtcaacgacatcgtccttgcaatcctcgagctcctcaagcgtcacgagcgagtattg
tatgtggacatcgatattcatcacggggatggagtagaagaggccttctatactactgat
agagtaatgacagtttcattccataagtttggagattattttcctggaacaggtgacata
cgcgatattggatatgggaaaggaaaatattactccctgaatgtgccattagatgatgga
atagatgatgagagctaccagtctctcttcaaacctatcatgggcaaagttatggaagtt
ttccggcctggtgctgtggtacttcagtgtggtgctgattcgctgtctggagataggtta
ggctgttttaatctttccatcagaggccacgcagagtgtgtgaggtacatgagatctttc
aatgtgccattgttgatgctgggcggtggtggatataccatcaggaatgttgcccgctgt
tggtgctacgagacaggagttgcacttggagtagaagttgatgacaagatgcctccaaat
gaatattttgagtactttggaccagattatactcttcatgtagcaccaagtaatatggag
aacaaaaattcacaccggcaattggatgatataagagcaaaacttctagataatctttca
aagattcagcatgctcctagtgtgcaatttcaggaacgaccacctgatacagaacttcct
gagccagatgaagatcatgaagatccagatcaacaacatgatcctgattctgacatggaa
attgacgattccaagcttccagatgactcatcacggaaaccattctctaatagtacacca
agtatgagaattaagaaggaaaatttggagactgatcttaaagatcaggaagctcaaaac
aaagtagcgggggatcacgggaaatctgtggaacccatggcagagttctcagctcccaag
gtagcatcagatataaattccatggaggtagatgaacctgggaccctaaagaatgaacaa
gacaatcaccataagtcctctgatgctccagcttttatgtaccaaaaatcctga

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