Zingiber officinale (ginger): 122015532
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Entry
122015532 CDS
T08725
Name
(RefSeq) polypyrimidine tract-binding protein homolog 3-like isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122015532
Spliceosome [BR:
zof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
122015532
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
RL
DUF3587
Motif
Other DBs
NCBI-GeneID:
122015532
NCBI-ProteinID:
XP_042428413
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All DBs
Position
8B:94923729..94930930
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AA seq
448 aa
AA seq
DB search
MTEPSKVIHVRNVGHEISENDLLQLVQPFGVVTKLVMLRAKNQALLQMHDLASAMNVIQY
YTNVQPSVRGRNVYIQFSSHQELTTTDQSSQGRKGDQDSPPNRILLVTIHQMLYPITVEV
LQQVFSPCGYVEKIVTFQKSAGFQALIQFESQQSAVQARSSLQGRNIYDGCCQLDIQFSN
LNELQVNYNNDRSRDFTNPSLPTEQRGRSSQQPGYGDAGSLYALQSSGGRVAYGQMGNAA
AIAAAFGGGLPPGVTGTNDRSTILVTNLDPDKIDEDKLFNLFSIYGNIVRIKLLRNKPDH
ALVQMEDGFQAELAVHFLKGSLLFGKRLELNFSKYPSITPASDTREYAGSSLNRFNNNAV
KNYKYCCSPTKMIHLSSLPQDIAEEEILTHLEEHGTILSTKLFEVNGKKQALILFEDEAQ
ATEALVCKHASSIARSVIRISFSQLQSI
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgacggagccctccaaagtcattcacgtccgtaacgtaggccacgagatatctgaaaat
gaccttcttcagttggtgcaaccttttggagttgtcaccaagcttgtgatgttacgagcc
aaaaaccaggctcttcttcagatgcatgatttagcttctgcaatgaatgttattcagtac
tacacgaatgtccaaccgagcgtcaggggacgaaatgtatatatacaattttcctcacat
caagaacttacaacaacagatcaaagctcgcaaggtcgcaaaggtgatcaggattcacca
cccaatcgaattctcttagttacaattcatcaaatgctttatcctatcacagtggaggtg
ttgcagcaagttttttctccatgtggatacgtggagaaaattgtgacgttccagaagtca
gctggtttccaggcccttatccagtttgaatcacaacaaagtgcagtgcaagcaagaagt
tctctacaaggacgcaatatatatgatggttgctgtcagttagatatacagttttcaaat
ctcaatgagttgcaagtaaattacaacaacgacagatccagagatttcacaaatccatct
ttgcccactgaacagagaggtagatcttcacaacagcccggttatggtgatgccggaagt
ctctatgctcttcaatcatctggcggcagagttgcctatggtcagatgggtaacgctgca
gcaattgcagctgcatttgggggaggattgcctcctggagttactggtactaatgacagg
tctacaatcttagtaactaatttagatcctgataaaattgatgaagataagcttttcaat
ttgttctcgatatatggcaatattgtaagaataaaactgctacgtaacaaacccgaccat
gctcttgttcagatggaggatggcttccaggcagaattagctgtacattttttgaaggga
tcattattgtttgggaagaggttggagttgaacttttccaagtatccaagcatcactcca
gcatctgatactcgtgaatacgccggttcaagccttaaccgcttcaacaataatgcggta
aaaaactacaagtattgttgctccccaacaaagatgatccatttgtcatctcttccccaa
gacatcgccgaggaggagattctcactcacctggaggagcacggcacaattttaagcaca
aaactcttcgaggtgaatgggaagaagcaggcgctgattctgtttgaggacgaggcacaa
gctacggaggcccttgtgtgcaagcatgcaagctccattgcgcggtctgtcatccggatt
tccttctcgcaactccaaagtatttag
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