Zingiber officinale (ginger): 122015595
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Entry
122015595 CDS
T08725
Name
(RefSeq) protein CHROMATIN REMODELING 20-like isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
122015595
03036 Chromosome and associated proteins [BR:
zof03036
]
122015595
Transcription factors [BR:
zof03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
122015595
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
122015595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
ADD_ATRX
Motif
Other DBs
NCBI-GeneID:
122015595
NCBI-ProteinID:
XP_042428504
LinkDB
All DBs
Position
8B:95924741..96006071
Genome browser
AA seq
1525 aa
AA seq
DB search
MDDLIEKETELRKVEVIIIEENDPEDIINEHEEKAKDDNIHQGEKGKGGLDAVKHGKDDN
SIESKVHIEPEADVIAEDYSDEDDENVSFEMLLDGSDNEITSASDNDCELKSEAPLTDAE
IEELIAEFLEVESKAAEAQESLEHESLANVESEVRAELAENLHGDELELAVSKEMKVLVE
MWTDTLDNLETQSALLLEQLDGAGIELPSLYKYIESRVPDCCRTEAWRKRAHWVGTQAPA
ELNQSIRDAEHYLQSCQPVRRKHGRVYEIGSGGYLAKNLSVKDSDNFREYSEQDWHTFDE
IIHSNQWSDINSLSNNWAAVYLASTPQQAANLGLNLPGVNEVEEIGEIEGNPLYAEAIQN
EKEIGFSEEQKRNYRKVREEDDMKVSKKLQLRLKQKRKRKEHIQNDILDGTANTGEFQSD
FIDQISPCPVAGHTTNTAQDLKLENSMDEKLILHGIIKKRLLESVDADGHDSKRCRAVVI
ESDDEVINVVKDKVAVQDLPMHLSPSERVREVNVIDVDVLCSPTSANYCSGSNVPLTFHC
TACSEVLKASEVQGHPLIEVIICGNCKLMVEDKMKTKDPDDFCRWCGKPDDLIGCNSCKM
LFCAMCISRNFGETQLLEVKANGWDCCCCLPMLLEPFILEFKKAVKGFSVSSSESEFELP
DGEMDVRLGHKKRRKRRIRRIMDDAELGEETKRKIAMEKARQDHLKSMQASSFSKLSTIR
SSNESATEGIMTDATEGFIINVARETDEEPVRIPQSICAKLKPHQISGIRFMWENIIQSV
RKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTALRKADLGLRTALVVTPVNVLHNWRREF
AKWQPTELKPLRVFMLEDVARERRLDLLLKWRMKGGVFLIGYAAFRNLSLGRHAKDRNTA
SEISHALRLVPDILVCDEAHMIKNTKADITQALKSVKTQRRIALTGSPLQNNLMEYYCMV
DFVREGFLGSSQEFRNRFQNPIENGQHTNSTMNDVRTMNQRSHILYEQLKGFVQRVDMNV
VKKDLPDKTVFVITVKLSPLQRKLYKKFLDVHGFTRESISSEKMIRKRCFFAGYQALAQI
WNHPGLLQMAKEHKNFSRKEDAVENFLVEDSSSDDNMESVFMNGDKQRLKDDLPCKGNDN
IFVPQEIGWWEDLIDDKIYQEVDYSGKMVLLLDILTMSSEIGDKVLIFSQSLTTLDLIEM
YLSKLPRKECEGKFWKQGKDWYRLDGSTQPSERQKLVEIFNEPSNRRVKCTLISTRAGSL
GINLHSANRVILVDGSWNPTYDLQAIYRVWRYGQNKPVYAYRLMAHGTMEEKIYKRQVTK
EGLAARVVDRQQVHRTMSKEEMLHLFDFGDDENVDVTEPADISLVNSDYERTNGIGCSRN
SLVNTDNLMDRLLRRHHPRWISNYHEHETLLQENEAERLTKEEQDMAWQIYQRSLEWEEV
SRAEIDDTRRVLNKNSLRENTVPQSVPQLAKSSSRSRLTNQRKCTNLAHLLTLRCEGIKS
GSSTICKECSQEISWENLNRDGRSR
NT seq
4578 nt
NT seq
+upstream
nt +downstream
nt
atggatgaccttatagaaaaagaaacagaactgaggaaagtggaagtaataataatagaa
gaaaatgatccagaagacataatcaatgaacatgaggaaaaggcaaaagatgacaatatt
catcaaggagagaaaggaaagggaggtcttgatgctgtgaaacatggaaaagatgataat
agcattgagtcaaaagttcatattgaaccagaggcagatgtgattgctgaggactacagt
gatgaggatgatgaaaatgtctcctttgaaatgcttcttgatggctcagataatgagata
acatcagcctctgacaatgattgtgaactaaaatctgaggcacctttaactgatgctgaa
attgaagaacttattgcagagtttcttgaagttgagagtaaggctgcagaagcacaagaa
tcacttgaacatgagtcactagctaatgtggaaagtgaagtaagagctgagctagctgaa
aatctccatggagatgagttagaattggctgtatcaaaggaaatgaaagtacttgtagaa
atgtggacagatactcttgacaatttagagactcaaagtgctctattgttggaacaactt
gatggagcaggaattgagcttccaagtctttacaaatatatagagagtcgagttccagat
tgctgtagaactgaagcttggaggaaacgagctcactgggtcggtactcaggcacctgct
gaacttaaccaatcaattagagatgctgaacattatctacaatcttgtcaacctgtaagg
aggaaacatggccgtgtctatgagataggctctggtggctatttagccaaaaatctttct
gtcaaggacagtgacaacttcagggaatattctgagcaagattggcatacatttgatgag
attattcattctaatcagtggtcagacattaactcacttagcaataattgggcagctgtt
tacctggctagtactcctcaacaagctgcaaatttaggacttaatttgcctggagttaat
gaggtagaggagattggtgaaattgaaggtaatccattatacgctgaagcaatccaaaat
gaaaaggagattggattttcggaagaacaaaagagaaactacagaaaggttagagaagaa
gatgacatgaaagtatcaaagaaacttcaacttcgtctgaaacaaaaaagaaaaagaaaa
gaacacattcagaatgacatattggatggcactgcaaacacaggtgagtttcagtcagat
ttcattgatcaaatttccccctgtccagttgctggccataccacaaatactgctcaagat
ttgaagcttgaaaattctatggatgaaaagctgattctgcatggtataatcaagaagagg
ttactcgaaagtgtggatgcagatggacatgacagtaaaagatgtagggcagttgtcata
gagagtgacgacgaagtaataaatgtcgtcaaagacaaggttgcggtgcaagatttgccg
atgcatctgagtccatctgaaagagttagagaagttaatgtgatagatgttgatgttctt
tgttcaccaacttcagctaattattgcagtggttcaaatgttcccctgacattccattgt
acagcttgttctgaagtacttaaagcttctgaagtgcaaggacatccattgattgaagta
attatttgtgggaattgtaagcttatggtagaagataaaatgaaaacaaaggaccctgat
gatttctgtagatggtgtggtaagcctgatgatctcatagggtgtaattcttgtaagatg
ctgttttgtgctatgtgtatatcaaggaattttggtgaaacacaattattggaagttaaa
gcaaatggttgggattgctgttgctgtttaccaatgctgttggaaccgtttatcttggaa
tttaagaaagctgtaaaaggattctcagtttctagctctgaaagtgagtttgagcttcca
gatggtgaaatggatgtcagactaggtcacaagaaaagaagaaaaaggaggattaggaga
attatggatgatgcagaacttggagaagaaacgaagagaaaaattgcaatggagaaggct
aggcaagatcatttgaaatcaatgcaggcatcatctttcagtaaattaagtactattaga
agtagtaatgaaagtgcaacagaaggcattatgactgatgcaactgagggtttcattatt
aatgttgctagagaaactgatgaggagcctgtgagaattccacaaagcatttgtgcaaag
ttgaagccccatcagatttcaggaatacgatttatgtgggaaaacattatacaatctgtc
agaaaggtcaaatctggggataaaggactaggatgtattttagcccacacaatgggcctg
ggcaaaactttccaggtcattgcattcctgtacactgctttgagaaaagctgatttaggt
ttaagaacagcacttgtggttacgcctgttaatgtgcttcataactggcgccgagaattt
gcaaagtggcaaccaacagagttaaagccccttcgtgtgttcatgttggaagatgttgcc
agggagagaagattagatttgcttttaaaatggagaatgaaaggcggagtatttctgatt
ggctatgctgcttttcggaacttgtctcttggaaggcatgcgaaggataggaatacagcc
agtgaaatttcacatgccttgcgtcttgtgcccgacattctagtttgtgatgaggctcat
atgatcaaaaatactaaggctgacataacacaagcgttaaaaagtgtaaagacacaaaga
agaattgccttaacagggtcacccttgcaaaacaatctgatggagtattattgtatggtt
gattttgtgagggaagggttccttggcagtagtcaggaattcagaaaccggttccagaat
cccatagaaaatggtcagcacacaaattctactatgaatgatgtcagaactatgaatcaa
agatcacacattctgtatgaacaactgaaaggttttgtccagcgagtggatatgaatgta
gtgaaaaaggatctccctgataaaacagtttttgttataactgtaaaactatctcctttg
caaagaaagctatataaaaagttcttagatgttcatggtttcaccagagagagtatttct
tctgaaaagatgattaggaaacgctgtttctttgctggttatcaggcattagcacagata
tggaatcatcctggtctgttgcaaatggctaaagaacataagaatttctcaaggaaagaa
gatgctgttgagaacttcttggtggaagacagttccagtgatgataatatggaaagtgtc
ttcatgaatggagacaagcaaaggttaaaggacgacttaccgtgcaagggaaatgataac
atttttgttccgcaggaaattggttggtgggaagatcttatagatgataaaatttaccaa
gaagttgattacagtggaaaaatggttttgctattagatatccttacaatgagttctgaa
ataggtgacaaggttctaattttcagccaaagtttgactactctagatttgatagaaatg
tatctgtcaaaattaccacgcaaggagtgcgaagggaagttttggaagcaaggcaaggat
tggtataggcttgatggtagcacacagccttctgaaaggcagaagctggtggagatattc
aatgaaccgtccaataggcgagtgaaatgcacattgatatccacacgtgctggatcatta
ggcatcaatcttcattctgctaaccgtgtgatccttgttgatggttcatggaatccaaca
tacgacctacaagcgatatatcgagtttggagatatgggcaaaacaagcctgtctatgcc
taccgcttgatggcacacggaaccatggaagaaaagatatacaagagacaggtcactaaa
gaaggacttgcagctagggtagtagatagacaacaagtacatagaacaatgtcaaaagag
gagatgcttcatctttttgactttggcgatgatgaaaatgtagatgtgactgagccagca
gatattagtctagtaaattcagattatgaaagaaccaatggaattggatgttcgaggaac
tctcttgttaatactgacaacctcatggacagattactcagaagacatcatccacgatgg
atctcgaattaccatgagcatgagacacttcttcaagagaatgaggctgagagattaact
aaagaggagcaagatatggcttggcagatttatcagagatcactggagtgggaggaagtt
agtagagccgagatcgatgatactcggagagttctcaacaagaattctcttcgtgaaaat
actgtgccccagtcagttccacaactagccaagagcagttcaaggagtcggctcacaaac
caaaggaaatgcaccaatctggcccacttgctaaccttaaggtgcgagggcataaagtct
ggatccagcacaatatgtaaagaatgctcacaggagattagctgggagaacctgaataga
gatgggaggtctaggtaa
DBGET
integrated database retrieval system
