Zingiber officinale (ginger): 122015623
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Entry
122015623 CDS
T08725
Name
(RefSeq) receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X1
KO
K15692
E3 ubiquitin-protein ligase RNF13 [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122015623
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122015623
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122015623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PA
zf-RING_2
zf-RING_11
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_5
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
122015623
NCBI-ProteinID:
XP_042428547
LinkDB
All DBs
Position
8B:complement(58017063..58022079)
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AA seq
462 aa
AA seq
DB search
MGLFKDETERKQMLTLFLLLALLAPEAAGNVVLIGKNVSFSFPDVEANFASPIKKSGESG
ILYVAEPLEACTTLTNELAKDSGTPFVLIRRGKCPFETKVRNAQYAGFKAAIVFDNEDRG
ILISMAGNSVGIHIHALFISKASGATLQNYAGRADLELWILPTIDNSAWAIVAISFMSLL
AISAVFAMCFLLRRNIIRREQSPLSQIREFHGMSSHLVKAMPSLEFTSVVEDNCTSTTCA
ICLEDYCAGDKLRVLPCSHKFHVCCVDYWLTSWRTFCPVCKRDATAGISITNLPATEHTP
LLYGATPTISSRPSSVHSPVAASPAVRISLMPPQSHSNSRSHSYASSPCSQPIRIMPFHL
RSNSSLASSISRIPNPHSSYGYSPSLDLRNSSSHRSRSHLTSPHSVYSPINSRLRSSFIP
GSSNPTSNNLAASSSRQSYLRHCTESEASLSALASTYSLPGC
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgggtttgttcaaggatgagactgagaggaagcagatgctaactcttttccttcttctc
gcactgctggctccggaagcggctggtaatgtggtgctgattgggaaaaatgtgtctttc
tcgtttccggacgtcgaagccaattttgcttcaccaataaaaaaatcaggtgaatctgga
atattatatgttgcagaaccgttagaagcgtgcactactttaacaaatgagctcgctaag
gattcaggaactccatttgtgttgatcagaagaggaaaatgtccttttgaaactaaagtc
aggaatgcacaatatgctgggtttaaagctgcaattgtattcgacaatgaagatagaggg
atcctgatttcaatggctggaaattcagtcggcattcatatccacgctttgttcatttca
aaggcttcaggagcgacactgcagaattatgctggccgtgctgatttagagttgtggatc
ttgcctaccattgataactcagcgtgggcaatcgtggccatttcattcatgtcactacta
gccatttccgctgtgtttgctatgtgttttttgctgcgcagaaatattataaggcgcgag
caatctccactttcgcagatccgtgaatttcatggaatgagcagtcatttagtgaaagca
atgccaagtctcgaattcacatcggtcgtcgaagataattgcacttcaacaacatgtgct
atttgcctagaagactattgtgcaggggataaacttcgtgtgcttccatgtagtcataag
ttccatgtgtgttgcgtcgactactggctcacttcttggagaacattctgccctgtttgc
aagcgagatgcaacggctggcataagcataactaatcttccggccaccgagcacactccc
ttactttatggtgcaactccaacaatcagttctcggccatcatcggttcattcacctgtt
gcagcatctccagcggttcgtatatctttaatgcctccacagtcgcattcaaattctcga
tctcattcctatgctagttctccttgttcccaacctatccgaataatgccatttcatctc
cggtctaattcaagtttagcatcgagcatttctcgtatccctaacccacatagttcttat
ggatactcaccatctttggaccttagaaattcatcgtcccataggtctcgctcgcatctc
acatctcctcattccgtttattcacctatcaattcgagactccgatcctctttcataccc
ggttcaagtaatccgacctccaacaatctagctgcatcctccagtagacaatcttacttg
cgacattgcaccgaatcagaggcaagtctttctgctctcgcttccacatattctctacca
ggatgttga
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integrated database retrieval system
