Zingiber officinale (ginger): 122015989
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Entry
122015989 CDS
T08725
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122015989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122015989
03041 Spliceosome [BR:
zof03041
]
122015989
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122015989
Spliceosome [BR:
zof03041
]
Complex B
Other components
Prp19-related factors
122015989
Complex C
122015989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_8
TPR_2
TPR_12
UTP6_C
PPR
ARM_TT21_C
ARM_TT21
TPR_CcmH_CycH
TPR_5
Motif
Other DBs
NCBI-GeneID:
122015989
NCBI-ProteinID:
XP_042429048
LinkDB
All DBs
Position
1A:complement(4516782..4522828)
Genome browser
AA seq
910 aa
AA seq
DB search
MAVAVATPTGISLDLYPGEEDLPYEEEILRNPFGLKLWWRYLIARASSPFRRRAVIYERA
LKALPGSYKLWHAYLRERLEAVRGRPINDPAFDSLNNTFERALVTMHKMPRIWLMYLTSL
SEQRLLTRARRTFDRALRSLPVTQHDRIWEPYLTLVSLPGVPVETSLRVFRRYLLFDPSH
IEDFIYFLIASKRWQEAAERLAGVLNDNSFHSIKGKTRHQLWLELCDILTHHATEVSGLN
VDAIIRGGIRRYTDEVGRLWTSLADYYVRRGLYEKARDIFEEGIQTVTTVRDFSVVFESY
AQFEQSALEAKMETAEEEEEDGEGEEDERKDDLSKLSKKFLHGFWLNDDNDTDLRMERFE
NLLSRRPELLNSVLLRQNPHNVEQWHRRVKIFENDPAKQVFTYIEAVRTIDPMKAVGKPH
TLWVAFARLYESHNDLKNARDIFEKAVNVNYKAVDHLATVWCEYAEMELRHKEFRTAIEL
MRKATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWSFYVDLEESLGTLESTRVVYERILD
LRIATPQIILNYAFFLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK
LERVRELFEHAIEQAPENEVKPIFLQYAKLEEEYGLAKRAMKVYDQAVKTVPDSEKLSMY
EIYIARAASIFGVPKTREIYEQAIESGLRDNDAKKMCLKYAELEKNLGEIDRARAIYVFA
SQFADPRSDPDFWKKWKDFEIQHGNEDTFREMLRIGRSVSASYSQTHVILPEYLMQKDQK
MNLEEAVDTLKRAGVPEDEMAALERQLAPATNNLPSKDGVRTVSFVSAGSESQSDGVRQV
TANSEDIELPEESDSDDEKIEISQKDVPASVFGDLANKRALDADHKADAKDNTNSTHLGA
LERIKRQRQQ
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggcggtggctactccaacagggatttcgctggatctgtaccccggagaggaa
gatctgccctatgaggaggagatactccgcaaccccttcggtctcaagctgtggtggcgc
tacctcatcgctcgcgcctcctcgcccttccggcgccgtgccgtcatctacgaacgcgcg
ctcaaggccttacctggaagctacaaactgtggcatgcgtacctccgcgagcgcctcgaa
gccgtccgcggccgccccatcaacgacccggccttcgattctctcaacaacacctttgag
cgcgccctcgtgacgatgcacaagatgcctcgcatctggctcatgtacctcacctccctc
tccgagcagcgactcctcacccgcgctcgtcggaccttcgatcgcgccctccgctccctc
cctgtaacccagcacgatcgcatctgggagccctacctcacccttgtctccctccccggt
gttcccgtggagacctccctacgcgtcttccgccggtacctcttgttcgatccttcccac
atcgaagatttcatctattttcttattgcctcgaagcgctggcaggaagccgcagagcgg
cttgctggtgtacttaatgacaacagcttccattccatcaagggtaagacacggcatcag
ctctggctcgagctttgcgacatcctcactcaccatgccactgaggtgtctggccttaat
gtcgacgccataatacgcggtggcatccgtcggtacacggatgaggttgggcgactatgg
acgtcccttgcggattactatgtccgcaggggattatatgagaaggcgagggacatcttt
gaggagggcattcaaactgtgacaacagttagggatttcagtgtggtctttgaaagttat
gcacagtttgaacagagcgcccttgaagcaaagatggagacagctgaggaggaggaggag
gatggggaaggggaggaagatgaaaggaaggatgatttatcaaagctcagcaagaagttc
ctccatggcttttggttaaatgatgacaatgatacagatttaaggatggagaggtttgag
aatcttctctctcgtcggccagagctccttaacagtgtgctcttacgacaaaatcctcac
aatgtggaacagtggcataggcgagttaaaatttttgagaatgatccagcaaaacaggtt
ttcacttacatagaggcagtgagaacaattgatccgatgaaggcagtggggaagcctcac
acactttgggttgcctttgcccgattatatgagagccacaatgatctcaagaacgccagg
gatatttttgagaaggctgtcaatgtcaattacaaggcggtggaccatctagcaactgtc
tggtgtgaatatgctgaaatggagctgagacacaaggagttcagaacagccattgagcta
atgcggaaggccactgcagagccctcagttgaagtcaagcgcagagttgctgccgatggt
aatgagcctgtacagatgaagctacacaaatccttgaggctgtggagcttttatgtggat
ttggaggagagccttgggacgttggagtcgacacgagtagtttatgagcgtatacttgat
ctgcgaatagcaactccgcaaattatcttaaattatgcattctttcttgaggagaacaaa
tactttgaagatgcattcaaggtttatgagaggggtgtgaagatatttaaatacccacat
gttaaagatatatgggtcacctacctctccaagtttgttaagagatatggaaagacaaag
ttggagcgtgtaagagagttgtttgaacatgctattgagcaggcacctgaaaatgaggtg
aagccaatattccttcaatatgcaaaactggaggaagaatatggccttgcgaagcgtgca
atgaaggtctatgatcaagcggtgaagactgtccctgacagtgagaaattgagcatgtat
gagatttatatagctagagcagcttcaatatttggcgttccaaaaactagggagatatac
gagcaagccattgaatctggcctgcgtgataatgatgccaagaaaatgtgcttgaagtat
gctgaattggaaaagaaccttggagaaatagatcgtgcacgggccatctatgtttttgca
tcacagtttgcagatccacgttctgatccagatttctggaaaaaatggaaagattttgag
attcagcacggtaacgaggacactttcagggaaatgcttcgtataggccgtagtgtttct
gcgagctacagccagacacatgtcatcctgcctgagtacttgatgcaaaaagatcaaaaa
atgaacttggaggaagctgtggacacactgaagcgtgcaggggtcccagaggatgaaatg
gctgctctagaaaggcagttggctcctgcaaccaacaatttaccttctaaggatggtgtc
cggacagtgagctttgtcagtgctggatctgaatcacagtcagatggtgttaggcaagtg
actgcaaacagcgaagatattgagttgcctgaggagagtgattcagatgacgagaaaatt
gaaatttctcagaaggatgttcctgcttctgtgtttggagatttggcaaacaagcgtgcc
ttggatgctgaccacaaagccgatgcgaaagataacacaaacagtacccatcttggagca
ctcgagcgaatcaagaggcaacggcaacaatga
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