Zingiber officinale (ginger): 122016103
Help
Entry
122016103 CDS
T08725
Name
(RefSeq) SWI/SNF complex subunit SWI3B-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122016103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122016103
03036 Chromosome and associated proteins [BR:
zof03036
]
122016103
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122016103
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122016103
PBAF complex
122016103
GBAF(ncBAF) complex
122016103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
NodS
TFIID-18kDa
Motif
Other DBs
NCBI-GeneID:
122016103
NCBI-ProteinID:
XP_042429225
LinkDB
All DBs
Position
8B:6647838..6653417
Genome browser
AA seq
515 aa
AA seq
DB search
MLKELLSGAMETTQPAASAPAPAPVPASSQTFTPSSAKSADPPQLLQTPSVSSTKSEGMV
AEPRDPPSSASLHPPEPSSSAGPSHASSSYVITIPSCSGWFSWDQIHNTERRILPEFFDG
KSASKNSEVYKYYRDFIIKRFRANPTRKITLTDVRRELVGDIGSIRRVFDFLEEWGLINY
TPLAKPSAEDKKGNDEGLEKKETPRRICTNCKSPCSMACFTTDKADIILCARCFVRGDYR
PGLSSTDFRRLNITEETKTDWTDKETLHLLEAILHYGEEWKKVAEHVGTRSEIDCIARFI
KLPFGEQFLGPEGSINGNSHKEKDEITTKSIEDNAPEQGSPKRMRLTPLADASNPIMAQV
SFLSAVVGSNVAQAAAQAAVSALPKVEIASGFTVNDDKLHSAADGAKEEDSPAVDQQAYS
EILSVAAAEAQAKLETEQKDVERYISDIVQVQMKEIQDKIIHFEELEYLLEKERLQLRHM
KDLLFEDQLTYLQHNTRPISKGAEGQNAKSNNHVP
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaggaactcctctccggcgcaatggagacgacgcaacccgctgcttctgctcct
gctcctgcacctgttcccgcttcctcccaaaccttcaccccatcgtccgcgaaatccgct
gatcctccgcaactcctgcagactccttccgtttcatccaccaaatctgagggcatggtc
gccgagccccgagatccaccgtcctcggctagtttgcacccgccggaaccctcctcgtcg
gcagggccttcccacgcctcctcttcgtacgtcatcaccattcccagctgctccgggtgg
ttctcttgggaccagatccacaatacggagcggagaatactaccagagttcttcgacggt
aagtccgcttccaagaattccgaagtctacaagtactacagggacttcatcattaaacgg
tttagggcgaatccaacgagaaagatcacattaactgatgttcggcgagagctggtcgga
gacattggttccattcggagggttttcgatttcttggaagaatggggtctaatcaattat
acgcccttagccaagccaagtgccgaggataagaagggaaatgatgaaggtttggagaaa
aaggagactcctaggagaatttgtactaattgcaaatcaccctgtagcatggcatgcttc
accacggataaggcagatattattctgtgtgctcgatgctttgttcgtggcgattatagg
cctggccttagttcaacagatttcagaaggcttaacattacagaagagacaaagactgat
tggactgacaaggagactcttcacctacttgaggccattttgcattatggcgaggaatgg
aagaaggttgcagagcatgtaggtaccagatctgagatagactgtattgctagattcatc
aaattaccttttggggaacaattcttggggcctgaaggtagcataaatggcaattcacac
aaggagaaagatgaaataactacaaaatcgatagaagataatgctccagaacagggttct
ccaaagcgaatgcgtctcacaccacttgctgatgcaagcaacccaatcatggcccaggtt
tcctttttatctgcagtggtgggctcaaatgttgctcaagctgcagcccaagcagctgtt
tcagcattaccaaaggtggagattgctagtggcttcacggtaaatgatgataagcttcac
tcggcagcagatggagcaaaggaagaagattctcctgctgtggatcagcaagcctattct
gagattctcagcgtggctgctgcagaggcacaggctaagcttgagactgaacagaaggat
gtggagcgatatatttctgatatagtgcaagttcagatgaaagaaatccaggataaaatt
atacacttcgaggagctagaatatcttctggagaaagagaggttgcaactgaggcacatg
aaggatcttctttttgaggatcaattgacttatctacagcacaacactcgaccaatatca
aaaggagctgaagggcagaacgcaaaatcaaacaatcatgttccttga
DBGET
integrated database retrieval system
