Zingiber officinale (ginger): 122016155
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Entry
122016155 CDS
T08725
Name
(RefSeq) RNA-binding protein 39-like isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122016155
Spliceosome [BR:
zof03041
]
Common components
Common spliceosomal components
General mRNP proteins
122016155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_7
Motif
Other DBs
NCBI-GeneID:
122016155
NCBI-ProteinID:
XP_042429309
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Position
8B:102746002..102759688
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AA seq
600 aa
AA seq
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MEFDEYEYLEKTVENPELSGEKPSANGAGEKDRKKSSKHRSSDDADRDSERRSKRSRSEE
KSSREHRDRHRESGSSRHRDRGSPDRRDKERHRDRDRERDREGREAERIQEKERIREREK
EKEKEKEMEREREREREKERERPRRSSSRSERHRDEERERYIDKSKERDYRERDRESRYA
RANSDGHHKMSIVEEFRHHREKKEDGAAEPEADPERDQRTVFAYQLSLKADERDVYEFFS
KAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNL
VQSNTTAGGTGLTGPNSGAARRLYVGNLHLNITEPQLRQVFEPFGQVELVQLPLDPLTGL
CKGYGFIQFARLEDARAAQSLNGQLEIAGRTIKVSAVTDQTGVQDTGTNAADLDDDEGGG
LSLNASSRALLMQKLAGTAGSIPGTLAAPAANPALLTPAASILGPSMIPSILQPSVPPFV
GLPTSGLPVASTAAAPPLHTAGVPSECLLLKNMFDPTVESEPDFDLDIKEDVHDECSKFG
TVKHIYVDKNSAGYVYLHFDDVTSSMKAQNALHGRWFAGKMITATYMAPQQYMAKFPNAS
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggagttcgacgagtacgagtacctcgagaagacggtggagaatcctgagctctccggg
gagaagccgtcagccaacggcgccggggagaaggaccggaagaagagctcaaagcaccgc
tcgtctgacgacgccgaccgcgattccgagcgccgttctaagcggtcgaggtcggaggag
aaaagcagccgtgagcaccgcgatcggcaccgtgagagcggctcgtcccgccaccgcgac
aggggttcaccagatcgccgggacaaggagcggcacagagaccgcgaccgggaacgggat
cgtgaggggagggaggcggagaggatccaagagaaggagaggatcagggaacgggagaag
gagaaggagaaggaaaaggagatggaaagggaaagggaaagggagagagaaaaagaaaga
gaaaggccgcggaggagcagtagccgttcagagaggcacagagacgaagaacgggagaga
tacatagataagagtaaggagagagactacagagaaagagatcgcgagtccagatatgct
agagcaaactcagatggccatcacaaaatgagcattgttgaggaattcagacatcaccga
gaaaagaaagaagacggagcagctgagccagaagctgatcctgaacgagatcaaagaacc
gtatttgcttatcagctttctttgaaggcagatgaaagagatgtttatgaatttttctca
aaagcaggaaaggtgcgtgatgttcgcctcataatggatcggaattctagacgttctaaa
ggagttgggtacattgagttctatgatgtaatgtcagtcccaatggcgatagctctttca
ggccaacttctccttggtcagccagttatggtgaaaccctcagaggctgagaaaaacttg
gttcagtcaaacacaactgcagggggaacagggctaactggaccaaattcaggtgctgct
aggcggttatatgttggtaatcttcatttgaacataaccgagcctcaacttcgccaggtc
tttgaaccatttggacaagttgagctagttcaattgccccttgatccgcttaccgggctt
tgcaaaggctatggttttatacagtttgctcgtcttgaagatgcgagagctgcacagagt
ttaaatgggcaattagaaattgctggcaggacaataaaggtttcagctgtgacggatcaa
actggagttcaagatactgggacaaatgctgctgatcttgatgatgatgaaggcggaggc
ttgtctctcaatgctagttccagagcacttttgatgcagaaattggcaggcactgctggc
agtattcctggaactcttgctgctcctgctgccaatcctgcccttctcactccagctgca
tcaattctgggtccttctatgattccttcaattctacagccttctgtacctccatttgta
ggccttccaacttcaggtctgccagttgcttcaacagctgcagctcctcctctacatact
gctggggtccctagtgaatgtttactgctgaagaatatgtttgatcctactgtggagagt
gaaccagattttgatttagacattaaggaggatgtgcatgatgaatgctccaagtttgga
acagtaaagcacatttacgtggacaaaaatagtgctgggtatgtatatctccactttgac
gatgtaacctcatccatgaaagcacagaacgcacttcatgggaggtggtttgctggaaag
atgatcactgcaacttacatggccccccagcagtatatggcaaaatttccaaatgctagc
tga
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