Zingiber officinale (ginger): 122016169
Help
Entry
122016169 CDS
T08725
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122016169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122016169
03041 Spliceosome [BR:
zof03041
]
122016169
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122016169
Spliceosome [BR:
zof03041
]
Complex B
Other components
Prp19-related factors
122016169
Complex C
122016169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
Suf
TPR_19
TPR_8
TPR_12
TPR_2
TPR_15
PPR
ARM_TT21_C
ARM_TT21
TPR_CcmH_CycH
TPR_5
Motif
Other DBs
NCBI-GeneID:
122016169
NCBI-ProteinID:
XP_042429330
LinkDB
All DBs
Position
1A:4797401..4802482
Genome browser
AA seq
873 aa
AA seq
DB search
MSVATQTAISSPFRRRAVIYERALKALPGSYKLWHAYLRERLEAVRGRPVNDPAFDSLNN
TFESALVTMHKMPRVWLMYLASLSEQRLLTRARRTFDRALRSLPVTQHDRIWEPYLTLVS
LPGVPVETSLRVFRRYLLFDLSHIEDFINFLMASKRWQEAAERLAGVLNDNSFRSIKGKT
RHQLWLELCDLLTHHATEVSGLNVDAIIRGGIRRYTDEVGRLWTSLADYYVRRGLYEKAR
DIFEEGVQIVTTVRDFSVIFESYAQFEQSALEAKMETAEEEKEDGEGEEDERKVDLSKLS
KKFLHGFWLNDDNDTDLRMERFENLLSRRPELLNSVLLRQNPHNVEQWHRRVKIFENDPA
KQVFTYTEAVRTIDPLKAVGKPHTLWVAFARLYESHNDLKNARDIFEKAVNVNYKAVDHL
ATVWCEYAEMELRHKEFRTAIELMRKATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWSF
YVDLEESLGMLESTRIVYERILDLRIATPQIILNYAFFLEENKYFEDAFKVYERGVKIFK
YPHVKDIWVTYLSKFVKRYGKTKLERVRELFEHAIEQAPENEVKPIFLQYARLEEEYGLA
KRAMKVYDQAVKTVPDSEKLSMYEIYIARAASIFGVPKTREIYQQAIESGLHDNDAKKMC
LKYAELEKNLGEIDRARAIYVFASQFADPLSDPDFWKKWKDFEIQHGNEDTFREMLRIGR
SVSASYSQTHVILPEYLMQKDQNMNVEEAVNTLKRAGVPEDEMAALERQLAPATNNLPSK
DGIRTVSFVSAGSESQSDGVRQVTANSEDIELPEESDSDDEKIEISQKDVPASVFGDLAN
KRALDADHEAEAKDNTDSTHLGALERIKRQRQQ
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtggctactcaaacggcgatttcttctcccttccggcgccgggccgtcatttac
gaacgcgcgctcaaggccttacctggaagctacaaactgtggcatgcgtacctccgcgag
cgcctcgaagccgtccgcggccgccccgtcaacgacccggccttcgattctctcaacaac
acctttgagagcgccctcgtgacgatgcacaagatgccccgcgtctggctcatgtatctc
gcctccctctccgagcagcgactcctcacccgcgctcgtcggaccttcgatcgtgccctc
cgctccctccctgtcacccagcacgatcgcatctgggagccctacctcactcttgtctcc
ctccccggtgttcccgtggagacctccctacgcgtcttccgccggtacctcttgttcgat
ctttcccacatcgaagatttcatcaattttcttatggcctcgaagcgctggcaggaagcc
gcagagcggcttgctggtgtacttaatgacaacagcttccgttccatcaagggtaagaca
cggcatcagctatggcttgagctttgcgacctcctcactcaccatgccactgaggtgtcc
ggccttaatgttgacgccataatacgaggtggcatccggcggtacacggatgaggttggg
cgactatggacgtcccttgcggattactatgtccgcaggggattgtatgagaaggcgagg
gacatctttgaggagggcgttcagattgtgacaacagttagggatttcagtgtgatcttt
gaaagttatgcacagtttgaacagagtgcacttgaagcaaagatggagacagctgaggag
gagaaggaggatggggaaggggaggaagatgaaaggaaggttgatttatcaaagctgagc
aagaagttcctccatggcttttggttaaatgatgacaatgatacagatttaaggatggag
aggtttgagaatcttctctcccgtcggccagagctccttaacagtgtgctcttacgacaa
aatcctcacaatgtggaacagtggcataggcgagttaaaatttttgagaatgatccagca
aaacaggttttcacttacacagaggcagtgagaacaattgatccgttgaaggcagtgggg
aagcctcacacactttgggttgcctttgcccgattatatgagagccacaatgatctcaag
aatgctagggatatttttgagaaggctgtcaatgtcaattacaaggcagtggaccatcta
gcaactgtctggtgtgaatatgctgaaatggagctgagacacaaggagttcagaacagcc
attgagctaatgcggaaggccactgcagagccctcagttgaagtcaagcgcagagttgct
gctgatggtaatgagcctgtacagatgaagctacacaaatcattgaggctgtggagcttt
tatgtggatttggaggagagccttgggatgttggagtcgactcgaatagtttatgagcgt
atacttgatctgcgaatagcaactccacaaattatcctaaattatgcattctttcttgag
gagaacaaatactttgaagatgcattcaaggtttatgagagaggtgtgaagatatttaaa
tacccacatgttaaagatatatgggtcacctacctctccaagtttgttaagagatatgga
aagacaaagttggagcgtgtaagagagttgtttgaacatgctattgagcaggcacctgaa
aatgaggtaaagccaatattccttcaatatgcaagactggaggaagagtatggtcttgcg
aagcgtgcaatgaaggtctatgatcaagcagtgaagactgtccctgacagtgagaaattg
agcatgtatgagatttatatagctagagcagcttcaatattcggtgttccaaaaactagg
gagatataccagcaagccattgaatctggtctgcatgataatgacgccaagaaaatgtgc
ttgaagtatgctgaattggaaaagaaccttggagaaatagatcgtgcacgggccatctat
gtttttgcatcacagtttgcagatccactttctgatccagatttctggaaaaaatggaaa
gattttgagattcagcatggtaatgaggacactttcagggaaatgcttcgtataggtcgt
agtgtttctgcgagctacagccagacacatgtcatcctgcctgagtacttgatgcaaaaa
gatcaaaatatgaacgtggaggaagctgtgaacacactgaagcgtgcaggggtcccagag
gatgaaatggctgctctagaaaggcagttggctcctgcaaccaacaatttgccttctaag
gatggtatccggacagtgagctttgtcagtgctggatctgaatcacagtcagatggtgtt
aggcaagtgactgctaacagtgaagatattgagttgcctgaggagagtgattcagatgac
gagaaaattgaaatttctcagaaggatgttcctgcttctgtgttcggagatttggcaaac
aagcgtgccttggatgctgaccacgaagccgaagctaaagataacacagacagtactcat
ctaggagcacttgagcgaatcaagaggcaacggcaacaatga
DBGET
integrated database retrieval system
