Zingiber officinale (ginger): 122016361
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Entry
122016361 CDS
T08725
Name
(RefSeq) histone-binding protein MSI1-like isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03082
ATP-dependent chromatin remodeling
zof03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122016361
03083 Polycomb repressive complex
122016361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zof03036
]
122016361
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
122016361
Histone modification proteins
HAT complexes
HATB complex
122016361
HDAC complexes
Sin3A-HDAC complex
122016361
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
122016361
PRC2.2
122016361
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
122016361
Heterochromatin formation proteins
Other heterochromatin formation proteins
122016361
Chromatin remodeling factors
NuRD complex
122016361
NuRF complex
122016361
NuRF complex (fruit fly)
122016361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
CAF1C_H4-bd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
WD_LRWD1
WD40_WDHD1_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
MIOS_WD40
WD40_RFWD3
Beta-prop_NUP159_NUP214
Beta-prop_HPS5
Beta-prop_WDR19_1st
RMC1_N
Motif
Other DBs
NCBI-GeneID:
122016361
NCBI-ProteinID:
XP_042429564
LinkDB
All DBs
Position
8B:56693231..56696422
Genome browser
AA seq
402 aa
AA seq
DB search
MTVTESDEGREAGEDYRSWKVNTPILYDLVISHPLRWPSLTVRWLPGSSPSSSSGSSRGG
ATHRLLLGSHTSDYAPNFFMTADVLFPLPPEAHPGAPLPKVEISQTIPHHGKVNRARFMP
QRPSVVATMTQDAEVHVFDCERRPLRPVEGEESGPDVVLRGLSKEGYGISWSPHKEGFLL
CGSYDSKICLWDVGMMPEEKILDARYLFEAHTDSVEDVAWHLKNEHMFGSVGNDHLLMIW
DVRSSASGKPQQSLKAHENEVNSLSFNPFNDWILATASKDSTVNLFDLRKLTTSLHTCLS
HVGSVVQVEWSPSHETIFATSATDKRLIIWDLNRIGDEQTADEAVFGPPEAFFVHAGHTA
KISEFSWNPEEPWVIASVADDNILQVWQMAERYRDDGSNDHR
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgacggtgacggagtctgatgagggccgcgaggcgggtgaggattaccgttcgtggaag
gtgaacacccctattctatacgacctcgtcatctcccaccccctcaggtggccctccctc
acagtccgatggctcccgggctcgtcgccgtcttcctcctccggaagcagccgcggcggc
gccacccaccgcctcctcctcggcagtcacacctccgactacgctcctaacttcttcatg
acggccgacgtgcttttccccctccctcccgaggcccatcccggcgcgccgctccccaag
gtcgagatctcgcagaccatccctcatcacggaaaggtcaatcgcgcccgattcatgccg
cagagaccatcggttgtagccaccatgacccaagacgcggaggttcacgtgttcgactgc
gagcggcggccactgaggccggtcgagggggaggagagtggtccggacgtcgtcttgagg
ggcctctccaaggagggatatgggatctcgtggagtccgcacaaggagggctttcttttg
tgcggatcgtatgattccaagatctgtctgtgggatgtgggaatgatgccggaagagaag
attcttgatgcaagatacctgtttgaggcccatactgattctgttgaggatgttgcttgg
cacttgaagaatgaacacatgtttgggtccgttgggaatgaccatcttttgatgatttgg
gacgttcgctcatcggcatctggaaagccacaacagtcattaaaagcccatgaaaatgag
gtcaattcactatcatttaatccgtttaatgactggattttggcaacagcgtctaaagac
agtacagttaacctatttgaccttcggaagctcactacaagtttacatacatgtttgagt
catgtaggatctgttgttcaagtggaatggagcccgagtcatgaaactatttttgctacc
tctgctactgacaaaaggctgataatttgggaccttaaccggattggggatgaacagact
gccgacgaagccgtctttgggccgccagaggcgttctttgttcacgccggtcacactgca
aagatctcagaattctcatggaaccccgaggagccttgggtcattgctagtgtggccgac
gacaatattcttcaggtatggcagatggctgagagataccgagatgacggcagcaatgat
catcgttga
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integrated database retrieval system
