Zingiber officinale (ginger): 122016447
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Entry
122016447 CDS
T08725
Name
(RefSeq) cell division control protein 48 homolog C-like isoform X1
KO
K14571
ribosome biogenesis ATPase
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122016447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122016447
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
122016447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
AAA_5
RuvB_N
AAA_16
AAA_2
TIP49
AAA_14
RNA_helicase
Rad17
AAA_22
AAA_28
nSTAND3
ABC_tran
AAA_33
NPHP3_N
AAA_17
AAA_11
AAA_3
AAA_18
NB-ARC
Mg_chelatase
ATPase_2
NACHT
Bac_DnaA
IstB_IS21
Viral_helicase1
TsaE
AAA_29
AAA_7
AAA_19
Vps4_C
Parvo_NS1
SKI
Nucleolin_bd
bpMoxR
AAA_lid_PRS2_C
CPT
Motif
Other DBs
NCBI-GeneID:
122016447
NCBI-ProteinID:
XP_042429680
LinkDB
All DBs
Position
8B:complement(43140847..43148468)
Genome browser
AA seq
787 aa
AA seq
DB search
MGKRGRCDFGRSFAGILRDRIASSGINVEEGVDLDALIANLRSSNPDYARLKAQPFARAV
RRTLASLSCKPAAAAVAREDNDIDDAGIDPASPGISRSALGRGDSVDSRLLRSETDETVS
DAQVEPEFDLMKSMLRDGYGKKSNSSKKDELESSSEEELDLEVEMEKPRKMRKVRKAIDR
SGPGNEAEISIEKENTGGGGMVDCVMEQGPRFCDLGGMKEIIEEMKLKVLYPLLVPELVQ
NLGIKPTTGILLHGPPGCGKSTLAYAIANEAKLPFHKIDATQIVSGITGASEENIRDLFC
KARRTAPSIILIEEIDAIASKRENEQKGMERRIVNQLMTCMDQSRKFHKTHNTNSKSETF
GWKSDYVLVIGTTNNPDALDSALRRTGRFDREIALGVPDENARLAILSILTRNLYLDDQL
NLSEIARRTPGFVGSDLDSLCNEAGFIAINHNVDGRKVQLSLEGKSIDDWCEERPDVEEI
NSVKIRMSDFEESLKMVQPSSMREGFSPIPNITWDDVGGLSSLKKIFEKIIIDRIKYPEV
YKKNGVKFEDGILLYGPPGCGKTLIVKAVANVVGVNFIYIEGPELLNKYVGESERKIRKV
FRRAQACSPCIVFFDEIDVLARKRKGENSQVVEQQLAQLLLELDGAKERKDVFVIAATNR
PEAVDPALLRPRRLGKVVYVSLPSFDERLLILKALAREMPISEDVDLVALAEECSNFSGA
DLASLMSEAATALSTEEIDCMKQGIEITQQSGIKPSHFRQVLQTIKPSVSEKERKYYEQL
SKNFKIR
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagcgaggaaggtgtgacttcggccgctccttcgccgggatcctccgcgaccgc
atcgcttcttccggcatcaacgtcgaagaaggtgtagatcttgacgctctaatcgctaat
ctgcgctcttcgaatcctgactacgcccgccttaaagcccaaccctttgcccgcgccgta
cggagaacgctagcgtctctcagctgcaagcccgccgccgcagccgttgcccgtgaagat
aacgacatagacgatgccggaattgatcctgcgagtcccggaatttctcgcagcgcgctc
ggacgtggtgactcggtagacagccgtcttcttcgctctgaaacggacgagactgtctcc
gacgcccaggtagagccggagtttgatctgatgaagtccatgcttcgtgatggctatgga
aagaaatccaactcatcgaaaaaggatgagctcgagtcatcaagcgaggaagaactggat
ttggaagtggagatggagaagccgaggaagatgaggaaggtgcggaaggctattgacaga
agtggtccagggaatgaggctgagatctctattgagaaggagaatactggaggaggtggg
atggtggattgtgtgatggaacaagggccacgattttgtgatcttggtggcatgaaggag
attattgaagaaatgaaactgaaggtgctatatcctcttcttgtgccagagctggtacag
aatttgggaattaagccaactactggaatactcttacacggcccacccggttgtgggaag
tcaacacttgcatatgccatagctaacgaggcgaaattgccattccacaagatcgatgca
actcaaattgtatctggaatcaccggtgcttctgaggagaatatacgagatcttttttgc
aaggcacgtcggactgctccatcgataattctcatcgaagaaatagatgccattgcctcc
aagagggaaaatgagcagaaggggatggagcgccgaatagtgaatcaattaatgacttgt
atggatcaatcacggaaatttcacaagacacataatactaactcaaaatcagaaactttt
ggttggaaatctgattatgttcttgttattggcactactaataatcctgatgctctggac
tctgcattgagaagaactggacgatttgatcgtgagattgctttaggtgtccccgatgaa
aatgcaaggcttgcaattttgtctattctcacgcgtaacctatatcttgatgatcaattg
aatctctctgaaatagctcggcgcacaccaggttttgtggggtctgatttggattcattg
tgcaatgaagctggttttatagcaataaatcataatgtagatggaagaaaagttcaactt
tcattagaaggaaaaagcatagatgattggtgtgaagaacgccctgacgttgaagaaatt
aatagtgttaagattcgaatgtcagactttgaggaatcactgaaaatggttcaaccttct
tctatgagagaaggattttccccaataccaaacattacatgggatgatgttggtggtctt
tcttcattaaaaaaaatatttgagaagattataattgatcgtataaaataccctgaggtt
tataagaaaaatggagtcaaattcgaggatggaattttattgtatgggcctccgggttgt
ggtaaaacattaattgtcaaggcagtagcaaatgttgtcggagtcaattttatttacata
gagggtcctgaattactaaacaaatacgttggtgaaagtgagcggaaaataagaaaagta
tttcgtcgtgctcaggcgtgttctccttgtatagttttctttgatgagattgatgttttg
gcacgtaagcgcaagggagaaaattcacaagttgttgaacaacaattggcccagctactt
cttgagctagatggtgctaaagagcgaaaagatgtatttgttattgcagcaacaaacaga
cctgaggctgtggatcctgctctcctaagaccacgaaggttgggcaaagttgtatatgtt
tcattgcctagttttgacgaacgactactaatattgaaggcacttgctcgagagatgcct
atttcagaagatgtagatttggttgctctggcagaggaatgttctaacttcagtggtgct
gatctagcttctttgatgagcgaagctgccacggctctttcaacagaggagattgattgc
atgaaacagggtattgagattacacaacaaagtggcattaagccatcacactttaggcaa
gttctgcagacaatcaagccatccgtctctgagaaggaaagaaaatattatgagcagtta
tcgaaaaattttaaaattcgctga
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