Zingiber officinale (ginger): 122016562
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Entry
122016562 CDS
T08725
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC1A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
122016562
04121 Ubiquitin system [BR:
zof04121
]
122016562
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122016562
Membrane trafficking [BR:
zof04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
122016562
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122016562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4_2
Zn_ribbon_19
zf-RING_11
zf-C3HC4
zf-RING_UBOX
zf-rbx1
zf-C3HC4_3
zf-RING_5
Rad50_zn_hook
CxC4
zf-Nse
C1_2
zf-C2HC_2
Motif
Other DBs
NCBI-GeneID:
122016562
NCBI-ProteinID:
XP_042429835
LinkDB
All DBs
Position
8B:complement(1977993..1980196)
Genome browser
AA seq
299 aa
AA seq
DB search
MSRANTHWCYVCRQAIRPLGTTMICPNCDRGFVQDLNELDGSPLDYLGEDYNNHSDNHFG
ILDALSALMRQHMGGLNREFDVNSRSNAPTGIEIVFDGGHGLGTRRVNIGDYLLGSGFDN
LIEQLTRNNSRGPPPASQSAIDSMPTVKISKRHLRGDSHCPVCKDRFELGSEAREMPCKH
IYHSDCIIPWLVHHNSCPVCRHQLPSHGSDHIPTRNHHSGGSGSSNTNSSRESGGEGHAR
RNNSNSSRESGGEGQTRRNPSSARPSQTANPTSSNANESSGSTSDGIHELHYTGWPFDY
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagagcaaatacacactggtgttatgtttgcaggcaagcaattcggccacttgga
acgaccatgatctgcccaaactgtgatagaggattcgtgcaagacctgaatgagctagat
ggaagcccacttgattacttgggggaggactataacaatcacagtgataatcattttgga
attctggatgctttgtctgccttgatgagacagcatatgggaggactgaatcgggaattt
gatgttaatagcagatccaatgctccaacagggattgagatagtcttcgatggaggacat
ggacttggtacaaggcgtgtcaatataggtgactatcttcttggttctggattcgataac
ctcatcgaacagctcactagaaacaacagtcgcggcccaccacctgcttctcaatcagca
attgactccatgcccactgtaaagataagcaagaggcatctccgtggtgattcacactgc
cctgtttgtaaagacagattcgagttgggatctgaagcacgggaaatgccctgtaagcat
atatatcactccgactgcattattccgtggctagtccatcacaattcttgcccggtttgt
cgtcatcagttgccatctcatggctctgaccatatcccgactagaaaccaccatagtggt
ggcagtggaagcagcaacactaacagtagcagagaatctggaggtgagggccatgccagg
aggaacaacagcaatagtagtagggaatctggcggtgagggccaaaccaggaggaatcct
tcctccgctcggccatcgcagactgctaatcctactagctctaatgcaaacgagtcgagt
gggagcaccagtgatggtattcatgaactccattacactggatggccttttgattattaa
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