Zingiber officinale (ginger): 122016677
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Entry
122016677 CDS
T08725
Name
(RefSeq) WD repeat-containing protein 75-like
KO
K14552
NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122016677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122016677
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
122016677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR75_1st
Beta-prop_WDR75_2nd
WD40_WDHD1_1st
WD40
Beta-prop_EML_2
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_IFT140_1st
WDR55
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
MUG2_C
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
122016677
NCBI-ProteinID:
XP_042429993
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All DBs
Position
8B:complement(67851952..67860491)
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AA seq
811 aa
AA seq
DB search
MITGGQRFVASPPAFSQDGKKLLVCTGCTVSIYSVSTGMQITELEGGHTDRVTSVVVVPV
GAPSSKFMSYCWTSSLDGTICYWDFASAELIKKVKIQFPVHSMVIPSLSTIGSTEEGSNL
YAFLSVEDINKPASEKKALHGQVRIYNLKNQKPVGGLLTETRNPEILYASKNGEFLGISN
KRKLHIWRIPANNFRFDEIKKIKLHHTKKLTCLAFHSTLRMVAGGDDTGRILIWYNFGRE
KFAQNLQNLKGTKNPSDEAKPGVRNNDDVDSCTTWHWHPSEVKFLHFSSDGAYLYSGGNE
GVIVVWQIDTGKKKFKPRLGSPLLYFTESPDPSLSCVSCSDNHIHLLKMPTMDISKSISG
IKPPFSFPLKHEGSCTQVAFEQTTGLVAVSTEDYCVQFYSLFDNHEVSEVQVCKRNFQPA
DDVMLYVALVAISLDGSLMATIDVTIPEEKLGGLVCLKYWTRGSLVAEYLLSTVIYEPHS
DAQVSSLAFRPGHNMAVTSSYGGDFKVWVHGSHAGRNNESMQRTGWRCQSVGSYKGKPLT
AAVFSADGSILAIAAETMITLWDPDSNILVAMIGDTLSPITKLSFVGKSEYLVSYTHSLK
PQLSVWSTSNLALYWSHGIVTEAVSCSHDESQFAVLALLSSPGDADAKGNGVIFFFHVED
PVPVATWTVTKAKGGSLAFLPANPSLHESSATNGVNQLLLVFMNGKHEYTIFNPHKEENI
ISKNSRKSQAAQDEAERLGYTSIYGDLSNSNAKHNHFQEVPFAPSERPWETIFSGSSHAL
PPLTKLCTSFFESLLEKRLENSNEMIIDADL
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgatcaccggcggccagagattcgttgcctcgcctcctgccttctcccaggatggaaag
aagctcttggtctgcaccggatgcactgtctccatctatagtgtctccactggaatgcag
attacggaattggagggtgggcacactgaccgagtcacttctgtcgttgtagtgccagtt
ggcgcgccttcaagtaagttcatgagctactgctggacttcctcattggatgggactatc
tgttactgggattttgcctcagctgagttgataaagaaggtgaagatccagtttccagtc
cattctatggtaattccaagtttatcaaccattggaagcaccgaagagggatctaatctt
tatgcatttctctcagttgaagacataaacaaaccagctagtgaaaagaaagcattacat
gggcaagtccgaatttacaatttaaaaaaccagaagcctgttggaggactgctgactgag
acaagaaatccagagatattatatgcaagtaaaaatggggagttcttaggcatctcaaac
aaaagaaagcttcatatttggagaattcctgcaaacaattttaggtttgacgaaataaaa
aagatcaaactacatcacacaaaaaagttgacatgtcttgcattccattcaactctgaga
atggtggctggaggtgatgatacaggaaggatcttgatatggtacaattttgggagagag
aaatttgctcaaaatttacaaaatctcaagggcacaaagaatccttctgatgaagcaaag
cctggggtgagaaataatgatgatgtggattcctgcacaacatggcattggcaccctagt
gaagtaaagtttcttcacttctcttctgacggcgcttatttgtattcaggtgggaacgaa
ggagttattgtggtttggcagattgacactggaaagaaaaaatttaagccacgactagga
tcaccgcttttatatttcactgaatctccagatccgtccctttcatgtgtatcttgttca
gataatcacattcatctgctaaaaatgcctacaatggatatctcaaaatccatatcggga
atcaagcctcctttttcgtttcctctcaaacatgaaggatcctgcacacaagttgcattt
gagcagacaactggattagttgctgtttccactgaagattattgtgtacaattctatagc
ttgtttgacaaccatgaggtttcagaggtccaagtgtgcaaaagaaattttcagcctgcg
gatgacgttatgctatatgtggctcttgtagccatttctcttgatggctccttaatggct
accattgatgtgacaattcctgaagaaaaattagggggtttggtttgtctaaaatactgg
actcgtggttccctagtggcagagtacttattatccactgtcatatatgagcctcacagt
gatgctcaagtttcatctcttgcatttcgccctggacacaacatggctgtcacatcatct
tatggtggtgactttaaggtttgggttcatggctctcatgccggcagaaataatgaatca
atgcagagaactggttggagatgccaatctgttggttcatacaagggaaaaccattaaca
gctgctgttttttctgccgatggatcgatccttgctattgcagctgagactatgattaca
ttatgggatccggattccaatattcttgtggctatgattggagatacactttcgccaatt
acaaaactttcatttgttgggaaatcagaatatctggtgtcctatacacacagtttaaag
ccacaactttcagtttggagtacttcaaatttggcattgtactggtctcatgggatcgtt
acagaagccgtaagctgttcccatgatgaatctcaattcgccgtcttagctcttctcagt
tcaccaggtgatgctgatgcaaaaggaaatggggtaatatttttcttccatgtggaagat
cctgttcctgtggcaacttggacagtgacaaaggcaaaaggtggtagcctagcctttcta
cctgccaatccttcgcttcacgaaagctcagctacaaatggcgtaaatcaacttttgctt
gtttttatgaacggcaagcatgaatacaccatcttcaatccacacaaggaagagaacata
attagcaagaattctcggaaaagtcaagctgcacaggatgaagcagagaggcttgggtat
acatcaatttatggagatctgtctaattcaaatgcaaagcacaaccatttccaagaagtt
ccatttgccccgagtgaaagaccatgggaaaccatattcagtggatcttcccatgctcta
cctccgctgaccaagctctgcacctcatttttcgaatcgttgttggagaaaaggctggag
aacagcaatgagatgataatagatgcagatctttga
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