Zingiber officinale (ginger): 122016719
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Entry
122016719 CDS
T08725
Name
(RefSeq) receptor homology region, transmembrane domain- and RING domain-containing protein 1-like
KO
K15692
E3 ubiquitin-protein ligase RNF13 [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122016719
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122016719
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122016719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-RING_5
zf-ANAPC11
AF_0924
Motif
Other DBs
NCBI-GeneID:
122016719
NCBI-ProteinID:
XP_042430042
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All DBs
Position
8B:complement(57986973..57991240)
Genome browser
AA seq
312 aa
AA seq
DB search
MAGNSVGIHIHALFISKASGATLQNYAGRADLELWILPTIDNSANIIRREQSPLSQIREF
HGMSSHLVKAMPSLEFTSVVEDNCTSTTCAICLEDYCAGDKLRVLPCSHKFHVCCVDYWL
TSWRTFCPVCKRDATAGISITNLPATEHTPLLYGATPTISSRPSSVHSPVAASPAVRISL
MPPQSHSNSRSHSYASSPCSQPIRIMPFHLRSNSSLASSISRIPNPHSSYGYSPSLDLRN
SSSHRSRSHLTSPHSVYSPINSRLRSSFIPGSSNPTSNNLAASSSRQSYLRHCTESEASL
SALASTYSLPGC
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaattcagtcggcattcatatccacgctttgttcatttcaaaggcttcagga
gcgacactgcagaattatgctggccgtgctgatttagagttgtggatcttgcctaccatt
gataactcagcaaatattataaggcgcgagcaatctccactttcgcagatccgtgaattt
catggaatgagcagtcatttagtgaaagcaatgccaagtctcgaattcacatcggtcgtc
gaagataattgcacttcaacaacatgtgctatttgcctagaagactattgtgcaggggat
aaacttcgtgtgcttccatgtagtcataagttccatgtgtgttgcgtcgactactggctc
acttcttggagaacattctgccctgtttgcaagcgagatgcaacggctggcataagcata
actaatcttccggccaccgagcacactcccttactttatggtgcaactccaacaatcagt
tctcggccatcatcggttcattcacctgttgcagcatctccagcggttcgtatatcttta
atgcctccacagtcgcattcaaattctcgatctcattcctatgctagttctccttgttcc
caacctatccgaataatgccatttcatctccggtctaattcaagtttagcatcgagcatt
tctcgtatccctaacccacatagttcttatggatactcaccatctttggaccttagaaat
tcatcgtcccataggtctcgctcgcatctcacatctcctcattccgtttattcacctatc
aattcgagactccgatcctctttcatacccggttcaagtaatccgacctccaacaatcta
gctgcatcctccagtagacaatcttacttgcgacattgcaccgaatcagaggcaagtctt
tctgctctcgcttccacatattctctaccaggatgttga
DBGET
integrated database retrieval system
