Zingiber officinale (ginger): 122016889
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Entry
122016889 CDS
T08725
Name
(RefSeq) ATP-dependent helicase BRM-like
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122016889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122016889
03036 Chromosome and associated proteins [BR:
zof03036
]
122016889
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122016889
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
122016889
Chromatin remodeling factors
BAF complex
122016889
PBAF complex
122016889
GBAF(ncBAF) complex
122016889
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
QLQ
DEAD
Bromodomain
AAA_14
Motif
Other DBs
NCBI-GeneID:
122016889
NCBI-ProteinID:
XP_042430251
LinkDB
All DBs
Position
8B:complement(55019489..55034846)
Genome browser
AA seq
2265 aa
AA seq
DB search
MQSGSGPSPAPAHQPPPGRSSPSSAASPSSSSSAVSAPNHLGLESMQQRQQQQRQLQLAH
RKALLAQQQNHHQQQQLSKAETDQSHLPYQAGGTFGVSGAGFLANSAPNLSQSSKKYGNI
PYQPSVLQLREENQSKGLGTGQQLQNPIHQAYLQFALQSAQQKSDGNFAMQQQVKTSMVS
QSGRDQDMIMNKLKMQELMSQTANKSQMPMFKRTVEQFTNAEKQMEQGRTNHDQRNDLKP
FPTDAHLASVNMIRPVQSLLPPSNVQNFANNQLEMVQMQAIQAWAKEHNIDLSVPANLNL
IAQILPLMQSNGVPAGQKPTETSTMIHQSLPTSKQQAMQSPAGSESSAHGNSTSDLSVGQ
HMKRRQMLPLCSNSAGDTPSINNSILHMKQQQFAENSQVGQNETVIRLPTVRCSGAQDTH
LANSSGSMNHTLEKSNYNSTSMVNKMQTQSFRPLQQANQPIPLLATPSNNITGAHNPTDT
GSSQTPKQHFGFTKKQLHVLKAQILAFRRLKRGERSLPPEVLQAISDSASDYQPSHGPSQ
PENVNHDSAKTAITSNNEHRRIIESNSQTEQSTFATKRHTQMKEEPFYGEEKIAFASQMQ
VSVDLEKEPAHMGSIGKLEESSSNVKSEQESEKGSQNSSSKGDCHVVKEKVSPADGGSMV
PGCVKMPAPTNTTESSRDGVLKKYHGPIFDFSSFTRRPDTLASTATNYSSNLTLAYDVKD
LLYEEAKSVLTKNRTENLKKISWLLAFNLERKIIKPDLVVQLQIEEKKLKLFNLQARLRD
EIEHQQEEIMAMSDRQYRKFVRQCEQQRVELARQVQQLQRASREKLLKSVFQWRKKLLES
HWAIRDARTTRNRGIAKYHERMLREFSKREDEDRNKRMEALKNNDVDRYREMLLEQQTSI
QGDAAQRYAVLSSFLTQTEEYLLRLGGKITDAKGNQEVEEAANAAASAARAQGLSSEEIR
AAAACAGEEVMIRNRFSEMNAPKDSSVNKYYNLAHAVTERVTRQPSMLRAGTLRDYQLVG
LQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE
LLNWLPSISCIFYVGSKEERSKLFSQEVCAVKFNVLVTTYEFIMYDRSKLSKIDWKYIVI
DEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNCKAFHD
WFSKPFQKDGPHNEEDEWLETEKKVIIIHRLHQILEPFMLRRRLEDVEGSLPRKIPIVVR
CRMSAIQGAIYDWIKPTGTIRVDPEDEIRRVQKNPLYQVKTYKNLNNKCMELRKVCNHPL
LNYPYLSNYSKDFIVRSCGKLWVLDRILIKLHRAGHRVLLFSTMTKLLDILEEYLQWRRL
VYRRIDGSTCLEDRELAIVDFNNPDSECFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPQ
NEEQAVARAHRIGQKREVKVIYMEAVVDKISSYLKEDELRSGIAGDSDDDLAGRDRYMGS
IESLIRSNIQQYKLDMADEVINAGRFDQRTTHEERRMTLEMLLHDEERYQENVHDVPSMQ
EVNRMIARSEEEVVLFDQMDEDLDWTADMIKHSEVPKWLRVSSSELDAVTASLSKKPLKN
ILSGNVVTEPNALMCDPSSSKMERRRGRPRKNYQVYLELDDEYGEDSDIDSEERNASEEE
VEVGGFNDEGFNDEEFIDDDVLRSHKIQVTQGMGHDKRGHVSSQTMVRRSTNTSSGSGRL
SQPQTPVLSSQKFGSLSLLEARPGLPLKKMSEELEEGEIAVSGDSHLDLQQSGSQLHDHE
DGEEDQQVLQPKIKRKRSIRIHPRYNVEKDDKQSDIAKIAARSSKLLKVGNEYDSPSRTG
KLESFSDAGLGKHGTTNSLLKHKHNTPAKKISPMPISDRISYFSGTTEDGNGHSRESWNN
KANNSGGSTHMGEKMSDITQRKCKNVISKLQMRIHKDGNQIVPIFYDWWRRKEKPTFAIS
AASGNVLDLQRIEQRVDNLEYSGVTDFIADVQTMLKSIVQHCNYTYEVKCEADKLQALFF
NIMKIAFPDSDFRQARNAVTFSNPRKPATMPAGSSHKLITNKIKRHTLINKLEKSSPPPR
TSPHMATPMDDESRTKLTSSKQPKDSRPVSGSWTEKALEPSQYPPHPGDLVICKKKRKER
DKSSVKQRIGPASPLNPSRFGPLSPTSSGGMSSGPSSSINRNSTLSIPRNSNSSLQAKHT
SSLPHREMQRPNDRNRVSCSIADIQWAKPVKRMRTDSGKRRPSQM
NT seq
6798 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctggcagcggccccagcccggcgccggctcatcagccgccgccggggcggtcg
tcaccgtcttccgccgcgtctccgtcctcctcgtcctccgccgtctccgctcccaaccac
cttggtctcgagtcgatgcagcagcggcaacagcagcagcggcagctgcagctggctcat
aggaaggcattactagcacaacaacaaaatcatcatcagcagcagcagctaagtaaagct
gaaaccgatcaatctcatcttccctatcaagctggtggtacatttggagtctctggagct
ggatttctggcaaactctgccccaaatttgtctcaatcatccaaaaaatatggcaatatt
ccttatcaaccaagtgtgttgcagcttcgcgaagaaaatcaaagtaaagggcttggcact
ggacaacaactgcagaatccaattcatcaagcttacctccaatttgctttgcagtctgct
cagcagaaatctgatggtaatttcgctatgcagcagcaagttaaaaccagtatggttagt
caatctggaagagatcaagacatgatcatgaacaaattaaagatgcaggaacttatgtca
cagactgctaataagtcacagatgcccatgtttaagagaacagttgaacaattcacaaat
gctgagaagcagatggagcaaggtcggacaaatcatgatcaaagaaatgatctgaagcct
ttcccaacagatgctcatttggcttctgttaacatgataagaccagtgcaatcactgctg
ccaccatctaatgtgcaaaattttgcaaacaaccaattagagatggtacagatgcaagca
attcaggcatgggctaaggaacataacattgatctgtctgttcctgcaaatttaaatttg
attgcccaaattctgccacttatgcagtcgaatggagttcctgctgggcaaaagccaact
gaaactagtacgatgatacatcaatctttaccgacttctaaacagcaggcaatgcagtca
ccagctggtagtgaaagttcagctcatggaaattcaacaagtgacttgtccgttgggcag
catatgaagcgtcgccaaatgcttccactgtgttctaatagtgctggagatacccctagc
atcaataatagtattttgcatatgaaacagcagcagtttgctgagaatagccaggtcggt
cagaatgaaacggttattcgacttccaacagtgcgctgcagtggtgcacaagatacacat
ttggcaaattcatctggttccatgaatcataccctagaaaaatctaattataatagtact
tcaatggtgaataaaatgcaaacgcaaagttttaggcccttgcagcaagcgaatcagccc
atcccattacttgcaactccatccaataatattacaggtgctcataatccaactgatact
ggatcttctcagacaccaaaacaacattttgggttcaccaagaaacaacttcatgttctc
aaggctcaaatcctagctttcaggcgtttgaagcgtggtgaacgaagtctaccacctgaa
gttcttcaagcaatctcagattctgcttcagattatcaaccatctcatggccccagtcaa
cctgaaaacgtaaaccatgattcggcaaagactgctatcaccagcaacaacgagcatagg
agaatcatagaatctaatagccagactgaacaatctacctttgcgaccaaaaggcatact
cagatgaaggaggagcctttttatggagaggagaaaattgcatttgccagtcaaatgcaa
gtttctgttgatttagaaaaggagcctgcgcacatgggttctattggtaagttggaagaa
agtagctccaatgtcaaatccgagcaagagagtgaaaagggaagtcaaaactcatcctcc
aaaggcgattgtcatgttgtcaaggaaaaagttagtcctgcagatggtggcagtatggtt
cctggatgtgtgaaaatgcctgcaccaacaaataccacagaatcttcaagagatggtgtt
ttgaaaaagtaccatggcccaatttttgatttctcatcatttactaggagacctgacacc
ttggcatcaacggctaccaattactccagtaatctaactttggcttatgatgtcaaagat
ttgctgtatgaggaagctaaatctgtgcttaccaagaatagaacagagaacttaaagaag
attagttggttacttgcatttaacctcgaacggaaaataattaagccagatcttgtggta
cagttgcaaattgaagagaaaaaactcaaactattcaatcttcaggcacgtttaagggat
gaaattgaacatcaacaagaggagataatggcaatgtctgacaggcaataccgcaaattt
gttagacaatgtgaacagcaacgcgttgagctagcaaggcaagttcaacagctgcaaagg
gcatcgagagagaagttactgaaatccgtatttcagtggcgtaagaaactcttagagtca
cattgggccattcgcgatgctcggactacacgaaatagaggaattgctaaatatcatgag
aggatgttgagagagttttctaagagggaggatgaagacagaaataaaagaatggaggca
ttgaagaataatgatgtagataggtaccgtgaaatgttactggagcagcagacaagcatc
caaggagatgctgctcagcgttatgctgttctttcttcctttttaacccagacagaggag
tatcttctcaggcttggggggaaaatcacagatgcaaagggtaatcaagaggttgaagaa
gcagcaaatgctgcagcttctgctgcacgtgcacagggtctttcatcagaagaaatcaga
gctgcagcagcatgcgcaggggaggaagtaatgatacgaaaccggttctctgaaatgaat
gccccaaaggacagttctgttaacaagtattataatttggctcatgctgtgacagaaaga
gtcacgaggcaaccttcgatgttgcgggctggaaccttgagagactatcaacttgttgga
ttgcagtggatgctttccttgtacaataacaagttgaatggtattttggcagatgagatg
ggtctcggcaagactgtgcaggtaatggcactgattgcttacctgatggagttcaaagga
aattatggcccacatttgatcatcgtccctaatgctgttttagtaaattggaagagtgag
ctgctaaattggctgccatctatatcatgcattttttatgttggtagcaaggaagaaagg
tcaaagcttttctctcaggaagtatgtgctgttaaatttaatgtgctggtaacaacttat
gaattcattatgtacgatcgctctaagctatcaaaaattgattggaagtacatcgtcatt
gatgaagctcaaagaatgaaagatagagaatctgttttggcacgtgaccttgatagatac
cgttgccaaaggcgattgctactcactggaacccctttgcagaatgacctcaaggagctg
tggtccctcttaaatctacttcttccagaagttttcgataattgcaaggcatttcatgat
tggttttcgaagccctttcagaaagatggtcctcataatgaagaggatgagtggcttgag
actgaaaaaaaggtgatcataatccacagactgcaccagattctggagcctttcatgctg
cgaagacgtcttgaggatgttgaaggttcacttcctcggaagattccaattgtggttagg
tgtagaatgtcagctatccaaggtgccatttatgactggattaaacctactggtactatt
agggttgatcctgaagatgagatccgccgtgtgcaaaagaatccactgtaccaggttaaa
acatataagaatcttaacaataaatgtatggagttgaggaaagtttgtaatcatcctttg
cttaactatccttacttgagtaactattcgaaggatttcattgttagatcgtgtgggaag
ctttgggttcttgacagaattctcataaaacttcacagagctggtcatcgagttctcctc
tttagtacaatgactaaacttcttgatattttagaggagtacttgcagtggcgaagactt
gtctatagacgtatagatggttcaacgtgcttggaggatcgggaattggcaattgtagat
ttcaacaaccctgattctgagtgttttatctttttgcttagcattcgtgctgctggaaga
ggtttaaatctccagacagcagatacagttgttatatatgatcctgatccaaatccccaa
aatgaagagcaagcagttgcaagggctcatcggattggacagaaacgagaggtgaaagtc
atatacatggaagctgttgttgacaaaatctcaagctatctgaaagaagatgagttaagg
agtggaatagctggggattcagatgatgatcttgctggcagagataggtacatggggtca
attgagagccttattagaagcaacatacaacaatataagctagatatggctgatgaagta
attaatgctggtcgttttgatcaaagaacaactcatgaggaaagacgaatgacactggag
atgctgctgcatgatgaagagagatatcaggaaaatgtacatgacgttccttctatgcaa
gaagtaaatcgcatgattgctcgtagtgaggaggaggttgtactatttgatcaaatggat
gaggatctagattggactgctgacatgattaaacacagtgaagtccctaagtggcttcga
gttagttctagtgagcttgatgccgttactgctagtttatccaagaaacctttaaaaaac
atattgtctggcaatgttgtaactgaacccaatgcacttatgtgtgatccttcctctagt
aaaatggaaaggagacggggccgccctagaaaaaattatcaagtttatctggaattggat
gatgaatatggtgaagattcagatattgattcagaggagaggaatgcttctgaagaagag
gtggaagttgggggtttcaatgatgaagggttcaatgatgaagaattcattgatgatgat
gttttacgcagccataagattcaagtaactcaggggatgggtcatgataaaaggggccat
gtgtcctctcaaacaatggttcgacgttctacaaacacatcttctggaagtggtagactg
tcacaacctcaaactcctgtgttgtcctcacaaaagtttggatctctttctttattagaa
gccaggcctggtcttcctttgaaaaagatgtctgaggaactagaggaaggtgaaattgca
gtctctggtgattctcacttggatctgcaacaatcaggtagccagcttcatgaccatgag
gatggagaggaagatcaacaggttttgcaaccaaaaataaagagaaagaggagtataagg
attcacccaagatataatgtagaaaaagatgataaacaatcagatattgcaaaaattgct
gcacgtagttcaaaactgctaaaggttggtaacgaatatgatagtccgtcaaggactgga
aaacttgagtcattttctgatgctggtttagggaagcatggcacaactaattcgttgttg
aagcacaagcataacacaccagcaaaaaagatttcacctatgccaatctctgacagaata
agttacttttctggtacaaccgaagatggtaatggacattctagagaaagttggaataac
aaggccaacaattctggtgggtctacgcacatgggtgaaaaaatgtctgacattacacaa
agaaagtgcaagaatgtcattagcaagctgcagatgagaatacataaagatggtaatcaa
attgtgccaattttttatgattggtggaggagaaaagagaaaccaacatttgctattagt
gctgcaagtggcaatgtcctggatcttcagagaatcgaacagcgcgtggacaatttggag
tacagtggtgtaacagacttcatagcagatgtgcagacgatgctaaaaagtatagttcag
cattgcaactatacatacgaggtgaagtgtgaagccgacaagctccaagctttgttcttt
aatataatgaagattgcatttccagattcagatttccggcaagctaggaatgcagttaca
ttttctaaccctaggaagcctgcgacaatgccagctggttcatcgcataaactaatcacc
aacaaaatcaagcggcacacactcattaacaagttggagaaatcctcgcctccaccaaga
acctcacctcatatggccactcctatggacgatgaatccaggaccaagttgacatcttcc
aagcagccaaaagattcgaggccggtttccgggagctggacagagaaggcacttgaacct
tcacaatacccgccgcacccgggtgatcttgtcatctgcaagaagaagaggaaagaaagg
gacaaatcctctgtcaagcaaagaattggtcctgcatcaccattgaaccccagtcgcttc
ggacccctctccccaaccagttcaggaggcatgagctccgggccatcttcctcgatcaac
cgaaactccaccctttcaattccaagaaattccaattcatctctccaggcaaagcacaca
tccagcttgccacatcgcgagatgcaacggcccaatgatcgcaacagggtttcgtgcagt
atagcagatatacaatgggccaaacctgtaaaaaggatgagaacagatagcggtaaaagg
aggccgagccagatgtga
DBGET
integrated database retrieval system
