Zingiber officinale (ginger): 122016889
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Entry
122016889 CDS
T08725
Name
(RefSeq) ATP-dependent helicase BRM-like
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122016889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122016889
03036 Chromosome and associated proteins [BR:
zof03036
]
122016889
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122016889
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
122016889
Chromatin remodeling factors
BAF complex
122016889
PBAF complex
122016889
GBAF(ncBAF) complex
122016889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
QLQ
DEAD
Bromodomain
AAA_14
Motif
Other DBs
NCBI-GeneID:
122016889
NCBI-ProteinID:
XP_042430251
LinkDB
All DBs
Position
8B:complement(55019489..55034846)
Genome browser
AA seq
2265 aa
AA seq
DB search
MQSGSGPSPAPAHQPPPGRSSPSSAASPSSSSSAVSAPNHLGLESMQQRQQQQRQLQLAH
RKALLAQQQNHHQQQQLSKAETDQSHLPYQAGGTFGVSGAGFLANSAPNLSQSSKKYGNI
PYQPSVLQLREENQSKGLGTGQQLQNPIHQAYLQFALQSAQQKSDGNFAMQQQVKTSMVS
QSGRDQDMIMNKLKMQELMSQTANKSQMPMFKRTVEQFTNAEKQMEQGRTNHDQRNDLKP
FPTDAHLASVNMIRPVQSLLPPSNVQNFANNQLEMVQMQAIQAWAKEHNIDLSVPANLNL
IAQILPLMQSNGVPAGQKPTETSTMIHQSLPTSKQQAMQSPAGSESSAHGNSTSDLSVGQ
HMKRRQMLPLCSNSAGDTPSINNSILHMKQQQFAENSQVGQNETVIRLPTVRCSGAQDTH
LANSSGSMNHTLEKSNYNSTSMVNKMQTQSFRPLQQANQPIPLLATPSNNITGAHNPTDT
GSSQTPKQHFGFTKKQLHVLKAQILAFRRLKRGERSLPPEVLQAISDSASDYQPSHGPSQ
PENVNHDSAKTAITSNNEHRRIIESNSQTEQSTFATKRHTQMKEEPFYGEEKIAFASQMQ
VSVDLEKEPAHMGSIGKLEESSSNVKSEQESEKGSQNSSSKGDCHVVKEKVSPADGGSMV
PGCVKMPAPTNTTESSRDGVLKKYHGPIFDFSSFTRRPDTLASTATNYSSNLTLAYDVKD
LLYEEAKSVLTKNRTENLKKISWLLAFNLERKIIKPDLVVQLQIEEKKLKLFNLQARLRD
EIEHQQEEIMAMSDRQYRKFVRQCEQQRVELARQVQQLQRASREKLLKSVFQWRKKLLES
HWAIRDARTTRNRGIAKYHERMLREFSKREDEDRNKRMEALKNNDVDRYREMLLEQQTSI
QGDAAQRYAVLSSFLTQTEEYLLRLGGKITDAKGNQEVEEAANAAASAARAQGLSSEEIR
AAAACAGEEVMIRNRFSEMNAPKDSSVNKYYNLAHAVTERVTRQPSMLRAGTLRDYQLVG
LQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE
LLNWLPSISCIFYVGSKEERSKLFSQEVCAVKFNVLVTTYEFIMYDRSKLSKIDWKYIVI
DEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNCKAFHD
WFSKPFQKDGPHNEEDEWLETEKKVIIIHRLHQILEPFMLRRRLEDVEGSLPRKIPIVVR
CRMSAIQGAIYDWIKPTGTIRVDPEDEIRRVQKNPLYQVKTYKNLNNKCMELRKVCNHPL
LNYPYLSNYSKDFIVRSCGKLWVLDRILIKLHRAGHRVLLFSTMTKLLDILEEYLQWRRL
VYRRIDGSTCLEDRELAIVDFNNPDSECFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPQ
NEEQAVARAHRIGQKREVKVIYMEAVVDKISSYLKEDELRSGIAGDSDDDLAGRDRYMGS
IESLIRSNIQQYKLDMADEVINAGRFDQRTTHEERRMTLEMLLHDEERYQENVHDVPSMQ
EVNRMIARSEEEVVLFDQMDEDLDWTADMIKHSEVPKWLRVSSSELDAVTASLSKKPLKN
ILSGNVVTEPNALMCDPSSSKMERRRGRPRKNYQVYLELDDEYGEDSDIDSEERNASEEE
VEVGGFNDEGFNDEEFIDDDVLRSHKIQVTQGMGHDKRGHVSSQTMVRRSTNTSSGSGRL
SQPQTPVLSSQKFGSLSLLEARPGLPLKKMSEELEEGEIAVSGDSHLDLQQSGSQLHDHE
DGEEDQQVLQPKIKRKRSIRIHPRYNVEKDDKQSDIAKIAARSSKLLKVGNEYDSPSRTG
KLESFSDAGLGKHGTTNSLLKHKHNTPAKKISPMPISDRISYFSGTTEDGNGHSRESWNN
KANNSGGSTHMGEKMSDITQRKCKNVISKLQMRIHKDGNQIVPIFYDWWRRKEKPTFAIS
AASGNVLDLQRIEQRVDNLEYSGVTDFIADVQTMLKSIVQHCNYTYEVKCEADKLQALFF
NIMKIAFPDSDFRQARNAVTFSNPRKPATMPAGSSHKLITNKIKRHTLINKLEKSSPPPR
TSPHMATPMDDESRTKLTSSKQPKDSRPVSGSWTEKALEPSQYPPHPGDLVICKKKRKER
DKSSVKQRIGPASPLNPSRFGPLSPTSSGGMSSGPSSSINRNSTLSIPRNSNSSLQAKHT
SSLPHREMQRPNDRNRVSCSIADIQWAKPVKRMRTDSGKRRPSQM
NT seq
6798 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctggcagcggccccagcccggcgccggctcatcagccgccgccggggcggtcg
tcaccgtcttccgccgcgtctccgtcctcctcgtcctccgccgtctccgctcccaaccac
cttggtctcgagtcgatgcagcagcggcaacagcagcagcggcagctgcagctggctcat
aggaaggcattactagcacaacaacaaaatcatcatcagcagcagcagctaagtaaagct
gaaaccgatcaatctcatcttccctatcaagctggtggtacatttggagtctctggagct
ggatttctggcaaactctgccccaaatttgtctcaatcatccaaaaaatatggcaatatt
ccttatcaaccaagtgtgttgcagcttcgcgaagaaaatcaaagtaaagggcttggcact
ggacaacaactgcagaatccaattcatcaagcttacctccaatttgctttgcagtctgct
cagcagaaatctgatggtaatttcgctatgcagcagcaagttaaaaccagtatggttagt
caatctggaagagatcaagacatgatcatgaacaaattaaagatgcaggaacttatgtca
cagactgctaataagtcacagatgcccatgtttaagagaacagttgaacaattcacaaat
gctgagaagcagatggagcaaggtcggacaaatcatgatcaaagaaatgatctgaagcct
ttcccaacagatgctcatttggcttctgttaacatgataagaccagtgcaatcactgctg
ccaccatctaatgtgcaaaattttgcaaacaaccaattagagatggtacagatgcaagca
attcaggcatgggctaaggaacataacattgatctgtctgttcctgcaaatttaaatttg
attgcccaaattctgccacttatgcagtcgaatggagttcctgctgggcaaaagccaact
gaaactagtacgatgatacatcaatctttaccgacttctaaacagcaggcaatgcagtca
ccagctggtagtgaaagttcagctcatggaaattcaacaagtgacttgtccgttgggcag
catatgaagcgtcgccaaatgcttccactgtgttctaatagtgctggagatacccctagc
atcaataatagtattttgcatatgaaacagcagcagtttgctgagaatagccaggtcggt
cagaatgaaacggttattcgacttccaacagtgcgctgcagtggtgcacaagatacacat
ttggcaaattcatctggttccatgaatcataccctagaaaaatctaattataatagtact
tcaatggtgaataaaatgcaaacgcaaagttttaggcccttgcagcaagcgaatcagccc
atcccattacttgcaactccatccaataatattacaggtgctcataatccaactgatact
ggatcttctcagacaccaaaacaacattttgggttcaccaagaaacaacttcatgttctc
aaggctcaaatcctagctttcaggcgtttgaagcgtggtgaacgaagtctaccacctgaa
gttcttcaagcaatctcagattctgcttcagattatcaaccatctcatggccccagtcaa
cctgaaaacgtaaaccatgattcggcaaagactgctatcaccagcaacaacgagcatagg
agaatcatagaatctaatagccagactgaacaatctacctttgcgaccaaaaggcatact
cagatgaaggaggagcctttttatggagaggagaaaattgcatttgccagtcaaatgcaa
gtttctgttgatttagaaaaggagcctgcgcacatgggttctattggtaagttggaagaa
agtagctccaatgtcaaatccgagcaagagagtgaaaagggaagtcaaaactcatcctcc
aaaggcgattgtcatgttgtcaaggaaaaagttagtcctgcagatggtggcagtatggtt
cctggatgtgtgaaaatgcctgcaccaacaaataccacagaatcttcaagagatggtgtt
ttgaaaaagtaccatggcccaatttttgatttctcatcatttactaggagacctgacacc
ttggcatcaacggctaccaattactccagtaatctaactttggcttatgatgtcaaagat
ttgctgtatgaggaagctaaatctgtgcttaccaagaatagaacagagaacttaaagaag
attagttggttacttgcatttaacctcgaacggaaaataattaagccagatcttgtggta
cagttgcaaattgaagagaaaaaactcaaactattcaatcttcaggcacgtttaagggat
gaaattgaacatcaacaagaggagataatggcaatgtctgacaggcaataccgcaaattt
gttagacaatgtgaacagcaacgcgttgagctagcaaggcaagttcaacagctgcaaagg
gcatcgagagagaagttactgaaatccgtatttcagtggcgtaagaaactcttagagtca
cattgggccattcgcgatgctcggactacacgaaatagaggaattgctaaatatcatgag
aggatgttgagagagttttctaagagggaggatgaagacagaaataaaagaatggaggca
ttgaagaataatgatgtagataggtaccgtgaaatgttactggagcagcagacaagcatc
caaggagatgctgctcagcgttatgctgttctttcttcctttttaacccagacagaggag
tatcttctcaggcttggggggaaaatcacagatgcaaagggtaatcaagaggttgaagaa
gcagcaaatgctgcagcttctgctgcacgtgcacagggtctttcatcagaagaaatcaga
gctgcagcagcatgcgcaggggaggaagtaatgatacgaaaccggttctctgaaatgaat
gccccaaaggacagttctgttaacaagtattataatttggctcatgctgtgacagaaaga
gtcacgaggcaaccttcgatgttgcgggctggaaccttgagagactatcaacttgttgga
ttgcagtggatgctttccttgtacaataacaagttgaatggtattttggcagatgagatg
ggtctcggcaagactgtgcaggtaatggcactgattgcttacctgatggagttcaaagga
aattatggcccacatttgatcatcgtccctaatgctgttttagtaaattggaagagtgag
ctgctaaattggctgccatctatatcatgcattttttatgttggtagcaaggaagaaagg
tcaaagcttttctctcaggaagtatgtgctgttaaatttaatgtgctggtaacaacttat
gaattcattatgtacgatcgctctaagctatcaaaaattgattggaagtacatcgtcatt
gatgaagctcaaagaatgaaagatagagaatctgttttggcacgtgaccttgatagatac
cgttgccaaaggcgattgctactcactggaacccctttgcagaatgacctcaaggagctg
tggtccctcttaaatctacttcttccagaagttttcgataattgcaaggcatttcatgat
tggttttcgaagccctttcagaaagatggtcctcataatgaagaggatgagtggcttgag
actgaaaaaaaggtgatcataatccacagactgcaccagattctggagcctttcatgctg
cgaagacgtcttgaggatgttgaaggttcacttcctcggaagattccaattgtggttagg
tgtagaatgtcagctatccaaggtgccatttatgactggattaaacctactggtactatt
agggttgatcctgaagatgagatccgccgtgtgcaaaagaatccactgtaccaggttaaa
acatataagaatcttaacaataaatgtatggagttgaggaaagtttgtaatcatcctttg
cttaactatccttacttgagtaactattcgaaggatttcattgttagatcgtgtgggaag
ctttgggttcttgacagaattctcataaaacttcacagagctggtcatcgagttctcctc
tttagtacaatgactaaacttcttgatattttagaggagtacttgcagtggcgaagactt
gtctatagacgtatagatggttcaacgtgcttggaggatcgggaattggcaattgtagat
ttcaacaaccctgattctgagtgttttatctttttgcttagcattcgtgctgctggaaga
ggtttaaatctccagacagcagatacagttgttatatatgatcctgatccaaatccccaa
aatgaagagcaagcagttgcaagggctcatcggattggacagaaacgagaggtgaaagtc
atatacatggaagctgttgttgacaaaatctcaagctatctgaaagaagatgagttaagg
agtggaatagctggggattcagatgatgatcttgctggcagagataggtacatggggtca
attgagagccttattagaagcaacatacaacaatataagctagatatggctgatgaagta
attaatgctggtcgttttgatcaaagaacaactcatgaggaaagacgaatgacactggag
atgctgctgcatgatgaagagagatatcaggaaaatgtacatgacgttccttctatgcaa
gaagtaaatcgcatgattgctcgtagtgaggaggaggttgtactatttgatcaaatggat
gaggatctagattggactgctgacatgattaaacacagtgaagtccctaagtggcttcga
gttagttctagtgagcttgatgccgttactgctagtttatccaagaaacctttaaaaaac
atattgtctggcaatgttgtaactgaacccaatgcacttatgtgtgatccttcctctagt
aaaatggaaaggagacggggccgccctagaaaaaattatcaagtttatctggaattggat
gatgaatatggtgaagattcagatattgattcagaggagaggaatgcttctgaagaagag
gtggaagttgggggtttcaatgatgaagggttcaatgatgaagaattcattgatgatgat
gttttacgcagccataagattcaagtaactcaggggatgggtcatgataaaaggggccat
gtgtcctctcaaacaatggttcgacgttctacaaacacatcttctggaagtggtagactg
tcacaacctcaaactcctgtgttgtcctcacaaaagtttggatctctttctttattagaa
gccaggcctggtcttcctttgaaaaagatgtctgaggaactagaggaaggtgaaattgca
gtctctggtgattctcacttggatctgcaacaatcaggtagccagcttcatgaccatgag
gatggagaggaagatcaacaggttttgcaaccaaaaataaagagaaagaggagtataagg
attcacccaagatataatgtagaaaaagatgataaacaatcagatattgcaaaaattgct
gcacgtagttcaaaactgctaaaggttggtaacgaatatgatagtccgtcaaggactgga
aaacttgagtcattttctgatgctggtttagggaagcatggcacaactaattcgttgttg
aagcacaagcataacacaccagcaaaaaagatttcacctatgccaatctctgacagaata
agttacttttctggtacaaccgaagatggtaatggacattctagagaaagttggaataac
aaggccaacaattctggtgggtctacgcacatgggtgaaaaaatgtctgacattacacaa
agaaagtgcaagaatgtcattagcaagctgcagatgagaatacataaagatggtaatcaa
attgtgccaattttttatgattggtggaggagaaaagagaaaccaacatttgctattagt
gctgcaagtggcaatgtcctggatcttcagagaatcgaacagcgcgtggacaatttggag
tacagtggtgtaacagacttcatagcagatgtgcagacgatgctaaaaagtatagttcag
cattgcaactatacatacgaggtgaagtgtgaagccgacaagctccaagctttgttcttt
aatataatgaagattgcatttccagattcagatttccggcaagctaggaatgcagttaca
ttttctaaccctaggaagcctgcgacaatgccagctggttcatcgcataaactaatcacc
aacaaaatcaagcggcacacactcattaacaagttggagaaatcctcgcctccaccaaga
acctcacctcatatggccactcctatggacgatgaatccaggaccaagttgacatcttcc
aagcagccaaaagattcgaggccggtttccgggagctggacagagaaggcacttgaacct
tcacaatacccgccgcacccgggtgatcttgtcatctgcaagaagaagaggaaagaaagg
gacaaatcctctgtcaagcaaagaattggtcctgcatcaccattgaaccccagtcgcttc
ggacccctctccccaaccagttcaggaggcatgagctccgggccatcttcctcgatcaac
cgaaactccaccctttcaattccaagaaattccaattcatctctccaggcaaagcacaca
tccagcttgccacatcgcgagatgcaacggcccaatgatcgcaacagggtttcgtgcagt
atagcagatatacaatgggccaaacctgtaaaaaggatgagaacagatagcggtaaaagg
aggccgagccagatgtga
DBGET
integrated database retrieval system
