KEGG   Zingiber officinale (ginger): 122017091
Entry
122017091         CDS       T08725                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 5A-like
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03020  RNA polymerase
zof03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    122017091
  09124 Replication and repair
   03420 Nucleotide excision repair
    122017091
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:zof03021]
    122017091
   03400 DNA repair and recombination proteins [BR:zof03400]
    122017091
Transcription machinery [BR:zof03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     122017091
  RNA polymerase III system
   RNA polymerase III
     122017091
  RNA polymerase I system
   RNA polymerase I
     122017091
DNA repair and recombination proteins [BR:zof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      122017091
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N NA-iREase1 Mrr_cat DUF2605
Other DBs
NCBI-GeneID: 122017091
NCBI-ProteinID: XP_042430523
LinkDB
Position
8B:1980459..1985693
AA seq 234 aa
MEAEMEAEMAETESGEGSAVPECLSSFVDRGSVESHRYFLARRTLLEMIRDRGFPVPDDE
LALTLPSFRSKFGDKPKLDDLRISLSIPCKGSPPKKLLVIFFGTEPFKLSTLREMYGAVK
QENLTNLILVLQSKMTSKARDGVKEISKIKVEMFQITELLVNITKHVLMPKHELLTTDEK
QDLLKKYNVGESQFPRMLESDPVSRYHGLKKGQIVKVTYEGELTGSHVTYRCVL
NT seq 705 nt   +upstreamnt  +downstreamnt
atggaggcggagatggaagcggagatggccgagacggaatcaggtgaaggatcggctgtg
ccggagtgcctgagctcgtttgtggaccgtggttcggtggagagccaccgatatttcctc
gcgcgacgcaccctactcgagatgatccgcgaccgaggtttccctgttccagacgacgaa
ctcgccctcacccttccctccttccgctctaagttcggcgataaaccgaagcttgacgac
ctcaggatctccctgagcatcccttgcaaaggcagcccccctaagaagcttctggtaatc
ttttttgggactgagcctttcaagttgtcaactctccgtgagatgtatggcgccgtcaaa
caagaaaacttgactaatttaatcttggtattacaaagtaaaatgacatccaaagccaga
gatggcgttaaagagatttctaagatcaaagtggagatgttccaaataactgaattgctg
gttaatatcacaaagcatgttttgatgccaaaacatgaattactaactacagatgagaaa
caagacctactgaagaagtacaacgtgggtgaaagtcagtttcctcgtatgcttgagagt
gatccagtttctcggtatcatgggttgaagaaagggcagattgttaaggtcacctatgaa
ggagagctcactggatctcatgttacttaccgctgcgttttgtaa

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