Zingiber officinale (ginger): 122017100
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Entry
122017100 CDS
T08725
Name
(RefSeq) structural maintenance of chromosomes protein 3
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zof03036
]
122017100
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
zof00535
]
122017100
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
122017100
Meiosis-specific proteins
Cohesin complex and associated proteins
122017100
Proteoglycans [BR:
zof00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
122017100
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_15
AAA_23
DEAD
Motif
Other DBs
NCBI-GeneID:
122017100
NCBI-ProteinID:
XP_042430532
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Position
8B:51602214..51663068
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AA seq
1201 aa
AA seq
DB search
MHIKQVIIEGFKSYKEEVSTEPFSPRVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRSDD
RHALLHEGAGHQVVSAFVEIVFDNSDNRIPVDREEVRLRRTISLKKDEYFLDGKHITKTE
VMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQ
ETGNKRKQIDQVVQYLEERLRELDEEKEELKKYQQLDKQRRSLEYTIYDKELSGVRQKLG
EIEESRNKVSEKSSNMHNRVLEAHENLKLLEKQSKILTKELQSLNKEKEEIEKKRTEALK
MHTQIELDLRDVEERLASDIRSKEEAARQLESLRKEIQESRDELNTIRPLHQSKVAEEEE
ITKGIMEREKQLSILYQKQGRATQFANKAARDKWLQREIDDLDRVLSSNVSQEKTLQDEI
EQLKEEERKLETYIRKRKVESEKQELLITNLQDDSDHLCKQRDELQDLRKSLWSEEANLS
AEIDKLKSELIKAQKSLDHATPGDIRRGLNSVNRIIKDHNIKGVFGPILELVECDSKFFT
AVEVTAGNSLFHVVVETDDISTRIIRYLTSEKGGRITFIPLNRVKVPHITYPQSSDVVPL
LKKLKFRSDCASAVEQVFGRTVICRDLDVATNVARNNSLDCITLEGDQVNKKGGMTGGFY
DFRRSKLKFFDTVRQNKMSIHSKTLEMDEIGKKLKEIDQEITKLVSEQQKINAHHGHVKS
ELKQLQSDIANVTKQKQSICKAVEKKEKLLANAHNQIVQIRASISMKQAEMGTELIDQLT
PEERDLLSRLNPEITELKERLLACKNNRIEIETRKEELETNLSTNLVRRLQELEGIILSA
DSDTLPKEAELKRLELKNSEVSIDKLYKQLEGVLKNIDNVTQKMLEIKTSKENRKMLEEK
YERTLQDEAKELEQLLSKRNILVSKQEDFMKKIRDLGSLPSDAFDTYKKKNIKELQKLLH
ACNEQLKQLSHVNKKALDQYINFTEQREQLQNRRAELDAGDQKIRELIAVLDQRKDESIE
RTFKGVARHFREVFSELVQGGHGYLVMMKKKDGDPGDDDVGEDGPDPEGRVEKYIGVKVK
VSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTSVGNM
IQRLSHNASTQFITTTFRPELVKVADKIYGVTHKNRVSHVNVVTKDEALDFIEQDQTQNP
E
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgcatataaagcaggttatcatcgaaggttttaagagttacaaggaggaggtctctacc
gagcccttcagccccagagttaactgcgttgtgggcgctaatggttctggaaagacaaac
ttctttcatgctattcggtttgtcttaagtgatctctttcagaacttgcgcagtgatgat
agacatgctcttctccatgaaggcgctggtcatcaagtggtgtctgcttttgttgagata
gtttttgacaattctgacaaccgcatccctgttgatagagaggaggtgcgattgcgacgg
acaataagtcttaaaaaggatgaatattttttggacgggaagcatatcactaagactgaa
gtaatgaatttgcttgagagtgctggtttctctcgctcaaacccatactatgttgttcaa
caagggaagattgcttcgcttacattaatgaaggattcagaacgccttgatctactgaag
gagattggtgggactcgtgtgtatgaggagagaagacgtgagagcttgaagattatgcaa
gaaaccggcaacaagaggaaacaaattgatcaagttgttcagtatttggaggagagatta
agagaacttgatgaagaaaaggaagagcttaaaaaatatcagcagcttgataagcaacga
agatcactagaatatactatttatgataaagaacttagtggtgtcaggcagaagctgggt
gagattgaggaatcaagaaacaaagtctctgagaagtcatctaatatgcacaatcgtgtg
ctagaagctcatgaaaaccttaaattattggagaaacaatccaagattttgacaaaagaa
ttgcaaagtttgaacaaagagaaagaagagatagagaaaaagcgaactgaagctttaaag
atgcacacacaaattgaacttgatctaagggatgtagaagagagacttgctagtgatatt
cgttcaaaggaagaagctgcaagacagttggagagtctacggaaggagattcaggagtct
cgagatgagctgaatacaatcaggcccttacaccagtcaaaagtagccgaagaggaggag
attaccaaaggtataatggagcgtgagaagcagttgagtattttgtaccagaaacaagga
cgggctacacagtttgctaataaagctgctcgtgataaatggcttcagagagagattgat
gatcttgatcgtgtgctatcatcaaatgtgtcacaggagaaaacacttcaggatgaaata
gaacaacttaaggaggaggaaagaaagttagagacatatataaggaaacgtaaagtggaa
tctgaaaagcaagaactattgataaccaacttacaagatgattctgatcatttgtgtaaa
cagagagatgagttgcaagatttgaggaaatccttgtggagtgaagaagcaaatctctca
gctgaaattgataaacttaaatctgaacttataaaggcacagaagagccttgaccatgct
acacctggtgatatcagaaggggattgaattctgtgaataggattattaaagatcacaat
attaaaggagtttttgggccaatattggagttggttgaatgtgactccaaattctttact
gctgttgaagtcactgctggaaatagcctatttcatgtggtggttgagacagatgacata
tcaacaaggattataagatacctaacttcagagaaaggtggaagaataacttttatacca
ctaaacagggtgaaagttccacatataacctatccacaaagttctgatgttgtaccacta
ttgaaaaaattgaaattccgatctgattgtgcttctgctgtagaacaggtatttggaagg
actgtaatatgtcgcgatttggatgtggctacaaatgttgctcgaaataatagtcttgat
tgcatcacattagaaggtgaccaagtaaacaagaaaggtggtatgactggaggattctat
gatttcagacgttcaaagctaaaattctttgacacagttcggcagaacaagatgtctatt
cactctaaaactttagagatggatgaaattgggaaaaaactgaaagagattgaccaggaa
attaccaaattggttagcgaacaacaaaaaataaatgctcaccatggtcatgtcaagtca
gagttgaagcaactacaaagtgacattgctaatgttactaagcagaagcagtcaatctgt
aaagctgttgaaaagaaggaaaaattacttgcgaatgcccataaccaaattgttcagata
cgagctagtatctcaatgaaacaagctgaaatgggcactgagctcattgatcaactaaca
ccagaagaaagagatcttctttcaagattaaaccctgaaataacagaattgaaagagagg
ctactggcttgtaaaaataacagaatagagattgagacccgaaaggaggaattggaaaca
aatttgtcaacaaaccttgtaagaagactgcaagagttggagggcataattttatccgca
gattctgacactttgcctaaggaagctgaattgaagaggctggagctaaagaattcagaa
gtttctattgataagctgtacaagcaacttgaaggtgttttgaaaaacatcgataatgtc
acacagaagatgttggagattaaaacttcaaaagaaaaccgaaagatgctcgaggaaaaa
tatgagcgcacacttcaagatgaagctaaggagttggaacaacttttgagcaaaaggaat
atccttgtgtcaaaacaagaggatttcatgaagaaaatccgggatttaggttcattgcca
tctgatgcctttgacacatataagaagaaaaacatcaaagaattgcagaaattgcttcat
gcgtgtaatgaacaattaaagcagcttagccatgtcaacaagaaggcacttgaccagtat
ataaacttcacagagcaacgtgaacaactacagaatagacgagctgaacttgatgctggt
gatcagaaaattcgggagctaattgcagtgctggatcagcgaaaggatgaatcaatagag
aggacattcaaaggtgtagcaagacattttagagaagttttttctgagctggtgcaaggt
ggccatggatacttggttatgatgaaaaaaaaggatggtgatcctggtgacgatgatgtt
ggtgaggatggacctgatccagaggggcgagtagagaaatatattggtgtcaaagtgaag
gtttccttcactggccaaggcgagacccagtctatgaagcaactttctggtggtcagaaa
actgtagttgctttgacattaatctttgccatccagcggtgtgatcctgctccattttat
ttgtttgatgagattgacgcagcattagatccacaatacagaacttccgttggaaatatg
atacaacgtctttctcacaatgcaagcactcagtttataactaccacattccgtccagag
ctcgtgaaagttgctgacaagatctacggtgtcacacacaagaacagagtcagccatgtt
aacgtggtcacaaaggacgaggctcttgattttattgagcaagaccaaactcaaaatccc
gagtga
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integrated database retrieval system
