Zingiber officinale (ginger): 122017109
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Entry
122017109 CDS
T08725
Name
(RefSeq) protein PAF1 homolog isoform X1
KO
K15174
RNA polymerase II-associated factor 1
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122017109
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
122017109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Paf1
Motif
Other DBs
NCBI-GeneID:
122017109
NCBI-ProteinID:
XP_042430547
LinkDB
All DBs
Position
8B:17643167..17653803
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AA seq
679 aa
AA seq
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MASFRHIAQPHPPSVVSPPAPHSNPQFQPYPYQQHGGSVPAYGRVPPVSASHAGFAGSFT
HPVSQQQYPYAPPFPQAPPPPSESYAPSVYYPSSQHLLQDNQSSHPPPPSSSPTNHSLPP
PPSPTVPPPSVLPPPPLSNQTQPNLPSMNVHHQGTTRVDPPGHQHKPTLPLKQQVPPSRP
TAGRVPIHAGGPNGASSRVETEGERRMRKKREYEKQKHEERRQLLLKHSQSIVLQKTNLL
AGNARPIVGSMTGSHVADQRTSSLLVGERIENRLKKPTTFICKMKFRNELPDPTTQPKLL
ALNKDKDRFSRYTITSLEKMHKPKLYIEQDLGIPLDLLDMSVYNPHAVHLSLAHEDEELL
HEDELVAPVKPDGIRRKERPMIEGVSWLVKTQYISPISTEVAKKSVTAKQAKEMRETREG
RNLSLENFNNREKQIQAIEESFTAAKLPPVHQSKPGLEPEEVWPLLPFFNRYEDQFVMVN
FPGDPTADLEKHSKLDRSSCHELQSQAIMKSFIMNGSDPNNPEKFLAYMTPSPDQLHKDE
TTRNEDTTYNWHGEYHWDARGEDTNDPTTYLVTFGEKDALYLPLPTKIVLLSKRVTETRP
RDEIEHFPVPSSVIVRKKSDNTAEEPNEYEEPYGKMEKLNGMKRKRGDSSMYKDDLDEQH
TFLRTNGLDQFSEEEDLSD
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccttccgccatatcgcacagcctcatcctccctctgtggtgtctcctcccgcg
cctcattccaacccccagttccagccgtacccataccagcaacacggtggctccgtccct
gcttacggtcgagtcccgccagtctccgcctcccacgctgggttcgccggttcattcacc
cacccagttagtcagcagcagtatccatatgcgcctccctttcctcaagcgccgccaccc
ccctcggaatcctacgctccgtcggtgtactatccttcttcgcagcatctgctccaggat
aaccaatcttctcacccgcctcctccctcgtcgtcgccgacaaatcattctctcccacct
ccgccgtctccaactgtcccaccaccctctgtcctgcctcctccccctctgtctaatcag
acccaaccaaatcttccgtccatgaacgtgcaccatcagggcaccactagagtcgatcct
cctggtcaccagcataaacccacgctcccgctgaagcagcaggtgcctccatctagacct
actgccgggagagtccctatccatgctggaggtccaaatggggcatcttccagggttgag
acggagggggaaaggaggatgcggaagaagagagaatatgagaagcagaagcatgaggag
aggaggcagcttttattgaagcactctcaatcaattgtgctgcaaaagaccaatttgctt
gcaggcaatgcaagacccattgttggctcaatgactggttctcacgtggcagatcagcga
acatcttcattgttggttggggagagaattgagaaccgccttaagaagcctacaactttt
atctgcaagatgaaatttaggaatgagttgccagacccaacaacacaaccaaaactatta
gcactaaataaagataaagatagatttagcagatacactattacatccttagagaagatg
cacaaacctaaactctacatcgaacaagatcttgggataccacttgatctactagatatg
agcgtctacaatcctcatgctgtccatctgtcccttgcccatgaagatgaagaactattg
cacgaggatgagttggtagctcctgtcaaaccagatggtataagaaggaaagagagacct
atgattgaaggtgtttcttggttggtaaaaactcaatacatttctcctattagcacggaa
gtagccaaaaagtctgttacagcaaaacaagcaaaagagatgcgtgaaacaagagaaggt
agaaatctttccttggagaattttaataatagggagaagcaaatacaagcaattgaagaa
tctttcacagcagccaaactgcctcctgtccatcaatctaaacctggactggaacctgag
gaggtttggcctttgttaccatttttcaacagatatgaagatcagtttgttatggtgaac
tttccaggagatccaacagctgacttagagaaacatagcaagttagacagatctagttgc
catgaacttcagtcacaggccataatgaagagctttataatgaatggatcagatcctaac
aatcctgagaaattcctagcctacatgactccttcaccagatcagttgcacaaggacgag
actactagaaatgaagatacaacatacaattggcatggggagtatcactgggatgctagg
ggtgaggatactaatgacccgacaacataccttgtaacgtttggagagaaagatgcactc
tatttgcctttgcctaccaagattgttttgctaagtaagagggtaacagaaacaaggcca
cgtgatgaaattgagcattttccagtgccatcaagcgtgatcgtaagaaagaaatcagat
aacacagctgaagaaccaaatgaatatgaggaaccttatggaaaaatggaaaaactaaat
ggcatgaaaagaaagagaggagattcatcaatgtacaaggatgaccttgacgaacaacac
acatttctgcgaacaaatggcctggatcagttcagcgaggaggaagatttgtctgattaa
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