Zingiber officinale (ginger): 122017277
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Entry
122017277 CDS
T08725
Name
(RefSeq) protein SMG7-like
KO
K14409
protein SMG7
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122017277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122017277
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
122017277
mRNA cycle factors
Common to processing body (P body) and stress granule
122017277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
122017277
NCBI-ProteinID:
XP_042430780
LinkDB
All DBs
Position
8B:43293770..43301919
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AA seq
965 aa
AA seq
DB search
MMIVPMDRSSSPSSRELVQRLLKKNIDLENGLRRSAQSKVPSDPNSWFQMRENYETIILE
DHDFSEKHDIEYVLWQLHYKRIEEFRHHINAASSAGSNTSGAKALVRLDKVKKIRSVFKS
FLMEATGFYHDLILKIRAKYGLPLSYFNEGTDSENVLTKDEKKLAEMKKGLMSCYHCLIY
LGDLARYKGLYGEGDSVRRDFAAATSYYMQATSMCPSHGNPHHQLAILASYSGDELLAIY
RYFRSLAVDIPFSTARDNLIVAFEKNRQSYSQLSCNSKTTSTGRIHMRSAGQARGGGNEK
LLEEDNKVESIHKEREMTKSEVLNAFSTRFVRLNGILFTRTSLEIFEEVFSSLINDLNVL
LSLGPEENLNFGLDATENASASLRHIAILIFTIHNVKRESENQSYAEVLQRTVLLQNAFI
FIFEFAGHIFKRCIDLHDAASSFLLPSILVFIEWLACHPDEAAASDIGEKFAVTRLFFWS
QCVALLNKLIQTGLVSVDGDSDEACFFSMNRYESETDNRVALWEDFELRGFSPMKPAHTI
LDFSRKHTYGSDGGKDKLSRVQRIIAAGRALAGVVSVNQQRIYIDPSLKKFIMSKEPPMI
GGRMDSTLSSSFDPIERILDIGRVPNTSSSGFSQTKTRPCVEGEEEEEEIVFRPTISDKY
EDVNVSKLTTFDIFNPLQASSAGDWMAHAHPPVPLDDVPISAVSNASLNLHPYVNTITQL
PLQHINSTSRWFPKQDEFLSDGLRNMNISGHLYMNNQMLQEGSNNLQRNSFLPGVCSSAI
PNANSAHSGQYKTSEVLFSSPLDTLVHSGAASDGSVFRPSLPLPSLRKTPVSRPVRRLGP
PPGFGHIPSKQQEEAIPNSYVKEQQPELDDYRWLDGHQSSSSKSIGMVNSLNQHPHGYPY
ANMSSTTAFANASSFPFPGKQVSSIQAQATDGHDLQDFEQLKARTRHKLEQSTPQNTLVP
EQHQP
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgatgattgttccaatggacaggtcatcgtctccctcgtctcgggagcttgtacaacgg
cttcttaaaaagaatattgatctagagaatggattgcgaaggtcagctcagtcaaaagtt
ccttcagaccccaattcatggtttcaaatgcgagagaactatgagactataattcttgaa
gatcatgatttttcagaaaaacatgatatcgagtatgtcctttggcaactgcactataaa
agaattgaagagtttaggcaccatattaatgctgcatcatctgctggatctaatacatct
ggtgcaaaggccctggttcgtcttgataaagtgaagaaaatccgttctgtctttaaaagc
tttctgatggaagcaactggattttaccatgatctgatattgaaaatcagggcaaaatat
ggcctacctttgagctactttaatgagggaactgacagtgaaaatgttttgacaaaagat
gagaagaaattggctgagatgaagaaaggacttatgtcttgttaccattgtttgatatat
ttgggagaccttgctcgttacaaaggactttatggggagggagactctgttagacgtgat
tttgcagctgctactagttactatatgcaggcaacttctatgtgtccttcacatggtaat
ccacatcaccagctggcaatacttgcttcctactcgggtgatgaactgttggcaatctac
cgctacttcagaagtctggctgtcgatattccattttcaacagcaagagataacttgatt
gttgcttttgagaagaaccgacaaagttactcacagctgtcttgcaattcaaaaacaacc
tcaacgggaagaattcatatgcggtcagctggacaagctagaggaggtgggaatgaaaag
cttctggaggaagataacaaagtagaaagtatccataaagagagagagatgactaagtca
gaagtacttaatgccttttctactcgctttgttcgccttaatggtatccttttcacgcga
acaagcttggaaatttttgaagaagtattttcttcattaattaatgatctgaatgtgctt
ttgtccttgggtcctgaagagaatcttaattttggtcttgatgctactgaaaatgcatca
gccagtctgaggcatattgccattctgatattcactatacataatgtgaaaagagagtct
gagaaccaatcgtatgctgaggtcttacagcgaactgtgttgttgcagaatgcatttata
tttatttttgagtttgctggtcacatttttaagcgatgcatagatcttcatgatgctgca
tcaagctttcttttgccatctatcctggttttcattgagtggttggcatgtcatccagat
gaagcagctgcttctgatattggggaaaaatttgctgttacaagattgttcttctggagc
caatgtgttgcattattgaacaagcttattcagactggtcttgtatctgttgatggtgac
agtgacgaagcttgctttttcagtatgaataggtatgaaagtgaaactgataatagggtt
gccctctgggaggattttgagttgagaggattctcacccatgaaaccagcacataccatc
ttggatttttcaaggaaacatacctatggaagtgatgggggcaaggataaattatctcgt
gtccagaggattatagccgctggtagagctcttgcaggtgttgtttcagttaatcagcag
agaatatatattgatccaagcctgaagaaattcataatgagcaaagagccaccaatgatt
ggaggccgtatggattctaccctttcaagttcatttgatccaattgagagaatacttgat
attgggagagtgccaaatacatctagttctgggttttcacagactaagacaagaccttgt
gttgaaggagaagaagaggaagaagaaattgttttcaggcctacaatttctgacaaatat
gaagatgtaaatgtttcaaaattgactacttttgacatattcaatcctctacaagcatca
tctgcaggtgattggatggcacatgctcatcctcctgttcctttagatgatgttccaatt
tcagctgtttcaaatgcgagtttgaatctgcatccatatgtcaatactatcacgcagctt
cctttgcagcatattaactctacttccaggtggtttccaaagcaagatgaattcctctct
gatggactaagaaatatgaatataagtggacatttatatatgaataaccaaatgttgcaa
gaaggatcaaataacttgcagcgaaattcatttttacctggagtttgttcttctgccatt
ccaaatgctaacagcgcacactctggtcaatataaaacatcagaggtcttgttttcgtcc
ccacttgatactttggtgcattcaggagcagcatctgacggaagtgttttcagaccttct
ctacccttaccatcactcagaaaaactcctgtaagtcgtccagttaggcgcttggggcca
cctcctggatttggccatattccttcaaagcagcaggaggaagcaattcctaactcttat
gtaaaggaacagcagcccgagcttgatgattacagatggctagatggtcatcaatcttca
tcttctaagagcatagggatggtgaactcactcaatcaacatccgcatgggtatccatat
gctaatatgagtagtactactgcctttgccaatgcttctagttttccatttcctgggaaa
caagtttctagtatacaggcacaggcaactgatgggcatgatcttcaggattttgagcaa
ctgaaagcccgtactaggcataaacttgagcaatcaaccccacaaaacactctcgtgcct
gaacaacatcaaccataa
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