Zingiber officinale (ginger): 122017536
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Entry
122017536 CDS
T08725
Name
(RefSeq) polypyrimidine tract-binding protein homolog 1-like
KO
K14948
polypyrimidine tract-binding protein 2
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122017536
Spliceosome [BR:
zof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
122017536
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_8
RRM_5
DUF4523
Motif
Other DBs
NCBI-GeneID:
122017536
NCBI-ProteinID:
XP_042431116
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All DBs
Position
8B:42411145..42416037
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AA seq
458 aa
AA seq
DB search
MAPGQGGGLPQQQFRYTQTPSKVLHLRNLPWECIEEEIVVLCKPFGRVVNTMCNVGANKN
QAFVEFADLNQAISMVSYYASSSEPAQVRGKTVYIQYSNRPEITNNRSTGEVPGNVLLVT
IEGVEDGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQYTDAETAASARHALDGRSI
PRYLLPEHITSCHLRISYSAHTDLSIKFQSHRSRDYTNPYLPVNPSAIEGGILSLSGPEV
KKQDPESNVLLATIENMQYAVTVDVLHTVFSAFGTVQKILIFEKNGGVQALIQYPDITTA
SVAKAALEGHSIYDGGYCRLHLTYSHHTDLSVKVHNDRGRDYTVQDSSIPTMPQAPILPT
STGWHAYPQSSSIYIGNDYPVSGQATVPLGQMPPWNIGTSGGSLVSTSANPVSYYPTSST
SAAPTWALQASQSSSQFGQLANAQPPAAPQTQFPYFAQ
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggcaccagggcaaggaggggggctgccgcagcagcagtttcgctacacgcagacgccg
tcgaaagtgctccaccttcggaacctgccgtgggagtgcatcgaggaggagatcgtcgtc
ctctgcaagccgttcggaagggtcgtcaataccatgtgcaacgtcggcgccaacaagaac
caggccttcgtcgaatttgcggaccttaaccaagcaatttcaatggtttcttactatgct
tcttcatctgagccagcccaagttcgtggaaaaactgtttatatccagtattctaacagg
ccagaaattacaaacaataggagtactggagaagttcctggcaatgttttgcttgtcact
atcgaaggtgttgaagatggcgatgtcagcatagatgttattcatctggtgttctcagcc
tttggctttgtgcataaaattgcaacctttgaaaaagctgctggctttcaggcactaatt
caatacacagatgcagagactgctgctagtgcaagacatgctttggatgggagaagtatt
cccaggtacttgctccctgaacatattacatcttgccatttgcgtatttcatattcggcc
cacacagatttaagcatcaaattccagtctcatcgtagcagggattacacaaatccttat
cttcctgtgaatccttctgctatagagggaggcatactgtctctgtcaggtcctgaagta
aagaagcaggatcctgagagtaacgtcctgttagctactatagagaacatgcaatatgct
gtgacagttgatgttcttcatacagtattttctgcttttggaactgtacagaaaatttta
atttttgagaaaaatggtggtgtgcaggccttgatacagtatccagatattaccactgct
tcagttgccaaagctgctttggagggacacagcatctatgatggtggttattgcagactc
catttgacatactctcatcatactgatctcagtgttaaggtgcacaatgatagaggaaga
gattacactgttcaagactctagtataccaacaatgccccaggctcccattttgccgaca
tccactggttggcacgcctatccacagtcttcgtccatatatattggcaatgattatcct
gtctcaggacaagcaacggttccactgggtcagatgcctccatggaacattggcacctca
ggtggaagcttggtgtcaacctctgcaaatcctgtttcttattaccctacttctagcacc
tctgccgcccctacttgggcgcttcaagcttcacaaagttcatctcaatttggtcaactg
gcaaatgcacagcctcctgctgcacctcaaactcagtttccctatttcgctcaatag
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