Zingiber officinale (ginger): 122017616
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Entry
122017616 CDS
T08725
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
zof04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122017616
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122017616
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
122017616
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122017616
03036 Chromosome and associated proteins [BR:
zof03036
]
122017616
Protein phosphatases and associated proteins [BR:
zof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
122017616
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
122017616
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
122017616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
mCpol
ComGF
Motif
Other DBs
NCBI-GeneID:
122017616
NCBI-ProteinID:
XP_042431202
LinkDB
All DBs
Position
8B:23735486..23761495
Genome browser
AA seq
513 aa
AA seq
DB search
MKGSGDVVAGTTTAEAPLPTQLDWKFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATG
DRGGRVVLFERTDVRNHASRKDLEMDGDPIGRHPEFHYKTEFQSHEPEFDYLKSLEIEEK
INKIKWCQTTNNSLFLLSTNDKTIKCWKVQEKKVKKIAEMNIHASENGSIASSSTTTSTS
YLPNGACAVIPHNHLSTDLSYPSGCSASLRLPVVVTSQDTCLIARCRRIYAHAHDYHINS
ISNNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPTHCNML
AYSSSKGSIRLIDLRQSALCDNHSKILDEREAPGSRSFFTEIITSISDIKFAKDGRYLLS
RDYMTLKLWDINMESSPVSTFQVHEYLRPKLCDLYENDSIFDKFDCCLSGDGLRVATGSY
SNLFRVFGCVPGSDEATTLEASKNPMRLQVQALPKPARSLGNLTRVVRRGSESPSDVNGN
SCDFTSKLLHLAWHPTENSIACAAMNSLYMYYA
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgaaggggagcggcgatgttgtcgccgggacgacgacggcggaggcgcccctgcctaca
cagctagactggaaattctcgcaggtgttcggggagcggacggcgggcgaggaggtccag
gaagtcgatattatttcagccattgaatttgacaagtctggtgatcatcttgccactgga
gatcgaggaggacgtgttgttttgtttgagaggactgatgttagaaatcatgcttcacgg
aaggatttggagatggatggcgatccaattggtaggcaccctgagtttcactacaaaact
gagttccaaagccacgagcctgagtttgactatcttaaaagcttggaaatagaggagaag
attaacaaaatcaagtggtgtcagacaaccaataattctctttttcttctttctaccaat
gacaagacaattaagtgctggaaggtgcaagaaaagaaagtgaaaaagattgctgagatg
aatatacacgcttcagaaaatgggagcattgcgagctcaagtacaactacttccacgagt
tacttgccaaacggtgcttgtgctgtaataccccacaatcacttgagcaccgacctctct
tacccctctggatgttctgcatcactacgtctgccagtggtagtgacaagccaagataca
tgtcttattgccagatgtagaaggatctatgctcatgctcatgattatcacattaattcc
atctctaataacagtgatggcgagacattcatatcagctgatgatctgcgaataaatctt
tggaatttggagatcagcagtcaaagctttaatattgttgatgtgaaacctgcaaacatg
gaggatttaactgaggtgataacatctgctgagtttcatccaacccattgtaacatgctg
gcatatagtagttcaaagggctcaatccggctcatagacttgcggcagtccgccttatgt
gataaccattccaagatattggatgaacgtgaagcgcctggttcacggtcatttttcaca
gagattattacatcaatttcagatattaaatttgcaaaagatggaagatatctccttagt
cgagattatatgacccttaagctatgggacataaacatggagtctagtcccgtttcaact
tttcaagtccatgagtatttaaggcctaagctttgtgatctctatgaaaatgattcaatc
tttgataaatttgattgctgtctcagtggtgatgggttgcgtgttgcaactgggagttac
agcaatctttttcgtgtatttggttgtgttcctggcagcgatgaagcaaccactttggag
gccagtaaaaatccaatgaggctgcaagtgcaagctcttccaaaacctgcaaggtctcta
ggcaacttgacacgagttgtcagacgaggttcagaaagcccttcagatgtgaatggaaat
tcatgtgattttacaagcaaattactccatttagcatggcaccctacagaaaattctatt
gcgtgtgctgcaatgaacagcttgtacatgtactatgcatga
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