Zingiber officinale (ginger): 122017664
Help
Entry
122017664 CDS
T08725
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122017664
03015 mRNA surveillance pathway
122017664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122017664
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122017664
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_ACIN1
PTS_EIIB
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
122017664
NCBI-ProteinID:
XP_042431268
LinkDB
All DBs
Position
1A:9410721..9420074
Genome browser
AA seq
424 aa
AA seq
DB search
MAKPGRARSRSSPSRSFSGSDSRSRSRSRSRSLSSSSSPSRSVSSRSRSPPPQKSGTTTV
RRGRSLTPPSKKTSPPPKKASPLPKKASPPPKKASPPRKASPVPESVVLHIDHLSRNVNE
AHLKEIFGNFGEIVNVELAMDRLVNLPRGYGYVEYKKRVDAEKALLYMDGGQIDGCITRV
RFTLTQRQKASSPIKVVPTAPKKEAPPKDKVGPPAEKDVPPQPRETSPRRKPPSPPRRRS
PPNRRVVSPRRRPDSSPRRRVESPVRRRVDSPANRRTETSPRRRPPSPPRRRSPSPPRRH
RSPVRISPRRGRGSPIRKRSPLPPRRRSPPRRARSPPRRSPPPPRHRSRSPMRRPLRSNS
RSISPRRGRAPPPRRGNSESSYSGSPSPRKGARRISRSRSPRRPVRGRSSSNSRSSSSPP
PRGK
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcctggcagagctcggtcccgatcctccccgtcgcggtcgttctccggctct
gattcccgatctcgatctcgctctcgctccaggtcactctcttcgtcctcctcgccctca
cgaagtgtgagctctcggagtcggtcccctccgccgcagaagagtggaaccacaactgtt
agaagaggtcgttcgctgacaccgccatctaaaaaaacttcaccaccgcctaaaaaagct
tcaccgctgcccaaaaaagcttcaccaccgcccaaaaaagcttcaccaccaaggaaagca
tcaccagtacctgagtctgtcgttcttcacatcgatcacttatctaggaatgtcaatgaa
gctcatcttaaagagattttcggtaattttggtgagatagtcaatgtagaactggcaatg
gatcgactggttaatcttcctcgtgggtatggatatgttgagtataagaagagagttgat
gctgagaaggctcttctttacatggatgggggtcaaattgatggatgtatcacccgggtg
agatttacacttacacaacgccagaaagcttcttcacctataaaggttgtgcctactgct
ccaaagaaggaagctccacctaaagataaagttggtccacctgcagaaaaagatgtgccc
ccacaacctagggaaacttctccaagaaggaaacctccctctccaccacggagacggtcc
cctccaaacagaagagttgtttcccctagacgtcgccctgattcctctccacgtcgtcgt
gtggaatctcctgttcgtagacgagtggattctcctgcaaatcggcgcactgaaacatca
cctcgacgaaggccaccttctcctcctagaagacgctctccgtcaccacctcggaggcat
agatcacctgttcggatctctcctagaagaggacgtgggagccctatccgtaaacgatct
cctcttccacctaggagacgatcacctcctaggcgagcaaggagcccaccaaggaggtca
cctcctccgcctcgacatcgtagccgttcgccaatgaggagacctctacgttctaattct
agatcaatatctcctcgcaggggccgtgctcctccaccaagacggggcaattcagaatca
tcatactctggatctcctagtcctcgcaagggtgctcgaagaatatcaagaagtcgcagt
cctagaaggcctgttagaggaagaagcagcagcaacagcaggagcagcagctcccctccg
ccgagaggtaagtaa
DBGET
integrated database retrieval system
