Zingiber officinale (ginger): 122018082
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Entry
122018082 CDS
T08725
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial-like
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
zof03016
]
122018082
Enzymes [BR:
zof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
122018082
Transfer RNA biogenesis [BR:
zof03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
122018082
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GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
Motif
Other DBs
NCBI-GeneID:
122018082
NCBI-ProteinID:
XP_042431691
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Position
1A:complement(10639081..10649117)
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AA seq
808 aa
AA seq
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MRTPMATRAMSGRGLLRVATYSPISSFISLRFFHPSSRHSPLRVGIHEVGHGCSLNPPGF
GLTRQLPLQSLGERGYVHSLVDSVMEELAVIRTNRRIRSTIKVGFPHNKELSDDVSEKRM
LQKGLLLEFRKDSQKTLLAVVQKPDGKKNWMVHDQNGVICSIKPQQVTYIVPGAEDFDHA
TISDFIQKAQDLSDPSILECAWAELLENKKSVTAEELAEMIYGSRESLESYCAHLLLSRD
DVYFSVVGNRDYCSVYEPRASVQVVELSQRKLAKQSSEKELEGFVHLLMSAKATLPCSKP
SRSSWMVEDKVKRKIQCLEAYALDMLESDEQRKTAGNILKAMGLTKTSSAAINLLIDIGY
FPVHVNLDLLKLRIKTDYNHEVLLASENLLMGSDDPDGSNRKDLTSLKVYAIDVDDADEL
DDALSATRLPDGKIKVWIHVADPTCLVAPHSIIDREAIRRGTSIFLPTATYPMFPEKLAM
EGMSLQQGKICKTVSVSVTLREDGSIADFAIENSIIRPTYMLTYESATELLHLNLEEEAE
LRILSEAALHRFQWRLSQGAIDTATIDTRIKVANPDDPEPVITLYVEDQSSPAMRLVSEM
MILCGEVIATFGSINNISLPYRGQPQSNISATAFSHLPEGPARTASYLKIMRAAEMDYRK
PIWHGLLGIPGYVQFTSPIRRYIDLLAHYQVKAFLRGEALPFSAGELEGMTCIVNMHVRV
AKKLQNNSLRYWILEYLRRQQRDRRFCALILRFIKHRTAALLLMEVGIQATADVSIGKQI
GDELRVIIVESHPRDDILSVKEVIDDSH
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgagaacgcccatggccacaagggcgatgagcggtcgcggcttgctgcgtgtcgccacg
tattctccgatttcttctttcatctccctgcgtttcttccacccaagcagccgccattcc
ccgctccgcgtcggaatccacgaggtcggacatggttgttccttgaaccctcctgggttc
ggattgactcgccaattaccactgcagtccttgggcgagcgcggctacgtgcacagcctc
gtcgattccgtcatggaggagttggctgttattcgtaccaaccgccgaatccgctctacc
atcaaagtgggatttccgcacaataaggagttatctgatgatgtatcagaaaagaggatg
ttgcagaagggcttgctactggaatttagaaaggattctcagaagacattgttagctgtg
gtccaaaaacctgatgggaagaagaattggatggtccatgatcagaatggcgtgatttgc
tcgataaagccccagcaagttacatacatagtacccggagctgaagattttgatcatgca
actatttctgattttattcagaaagctcaagatctctcggatccatcgattctagagtgc
gcatgggcggaacttttagaaaataaaaagtcagttacagctgaggagttagcagagatg
atatatggaagcagggaatctcttgaaagctactgtgctcatctcttgttgtcaagagat
gatgtatattttagtgtggttggcaacagagactattgttctgtatatgaacctcgagcc
agtgttcaggtggtggagctctcacaaaggaagcttgccaagcaatcttctgagaaggaa
cttgaagggtttgtgcatttactgatgtctgcaaaagctacgcttccatgttcaaaacca
tccagaagttcatggatggttgaggataaagttaaaaggaaaattcaatgtcttgaggct
tatgctttagatatgcttgaaagtgatgaacagaggaaaactgctggaaatatactcaag
gctatgggattaacgaagacatcatctgctgcaattaacctcctcatagatattggttac
ttccctgtacatgtcaatcttgatctccttaagctcagaattaagactgactacaatcat
gaagtcttgttggcatctgaaaaccttttaatgggttctgatgatcctgatgggagtaac
aggaaggatcttacatctctgaaagtgtacgcaattgacgtggatgatgctgatgagctt
gatgatgcgttaagtgctacaaggctaccagatggaaagataaaagtgtggatccatgtt
gctgatcccacatgtttggtcgcacctcatagtataattgaccgggaggctataagaaga
ggaacttccatatttttacctactgctacctatccaatgttcccagaaaagcttgcaatg
gagggtatgagtttgcaacaaggcaaaatatgcaaaactgtcagcgtatcagtaacatta
agggaagatggaagcattgcagattttgctatagagaactcaattatcagacccacctat
atgctgacttatgagagtgctactgaattacttcatctgaatttggaagaggaggctgaa
cttcggattctatcagaagctgccctgcaccgtttccaatggcgtctaagccagggtgca
atagacacagcaacaatagatacacgcatcaaggtggcaaaccctgatgatcctgaacct
gttataactctctatgttgaagatcagtcaagccctgcaatgcgactagtttcagagatg
atgatactttgtggggaggttattgctacatttggttctatcaacaacatttcactgcca
tacagagggcaaccacaatcgaacatttctgcaacagcattttctcatcttcctgaaggg
cctgccagaactgcttcttacctaaaaattatgcgcgctgctgaaatggattatcggaaa
cctatatggcatggattattaggtattcctggttatgtacagttcacatctccaatccgt
cgatacattgatcttctagctcactatcaggttaaggcttttcttagaggagaagcttta
cccttttcagctggtgaattggaaggaatgacatgcattgtgaacatgcatgtaagagtt
gctaagaaacttcaaaataacagtttaaggtattggatattggagtatctgagaagacag
caaagggataggaggttttgtgctttgatcctcaggtttatcaagcatcgaacagcagcc
ttgcttttgatggaggtgggaattcaagctaccgcagatgtttctattggaaaacagatt
ggagatgagctgcgagtcatcatagtcgaatctcatcctcgtgatgatatcctttcagta
aaggaagttattgacgactcacattga
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