Zingiber officinale (ginger): 122018493
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Entry
122018493 CDS
T08725
Name
(RefSeq) coatomer subunit alpha-1-like
KO
K05236
coatomer subunit alpha
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
122018493
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zof04147
]
122018493
Membrane trafficking [BR:
zof04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
122018493
Exosome [BR:
zof04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122018493
Exosomal proteins of bladder cancer cells
122018493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
TPR_COPA_B
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_DCAF4
ANAPC4_WD40
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
NBCH_WD40
Fis1_TPR_C
Beta-prop_Nup120_160
Beta-prop_RIG_2nd
ENTH
PAPS_reduct
Motif
Other DBs
NCBI-GeneID:
122018493
NCBI-ProteinID:
XP_042431759
LinkDB
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Position
9A:complement(2732311..2737164)
Genome browser
AA seq
1214 aa
AA seq
DB search
MLTKFETKSNRVKGVSFHSKRPWVLASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHDEHPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTIRVWDISSLRKKVAPADDLLRL
GQINSDLFGGVDAVVKYVLEGHDRGVNWASFHPSLPLIVSGADDRQVKLWRMNDTKAWEV
DTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWILATHPE
TNLLAAGHDSGMIVFKLERERPAFSVSGDTLHYVKDRFLRVYEFSTQKDNQVVPIRRPGS
VSLNQGPRTLSFSPTENAVLICSDVDGGSYELYIVPKDAAGRGDYMQDARKGVGASAVFV
ARNRFAVLDRSSNQAIVKNLKNEIIKKSPLPIGTDAIYYAGTGNLLCRAEDRVLIFDLQQ
RIVLGELQTPSVKYIVWSSDMESVALLGKHTIIIANKKLVHRCTMHETIRVKSGAWDDKG
VFIYTTLNHIKYCLPNGDGGIIKTLDVTIYITKVSGNNIYCLDRDGKNHVVSIDSTEYIF
KLSLFHKRYDHVMNMIKNSQLCGQAVISYLQQKGFPEVALHFVKDEKTRFNLALESGNIQ
IAVASAKEIDDKDHWYRLGIEALRQGNTSIVEYAYQRTKNFERLSFLYLITGNREKLSKM
LRIAEIKNDIMGQFHNAMYLGDIHERIKILENAGHLPLAYATAVSHGLEEIASRLATELG
ENVPILPEDKKRSLLLPPSSLMCCGDWPLLRVMRGIFDNALDTGRAGNEEEEDANNADWG
DEELDIVDVDDMIQNADISAELEDGIENKDNEEGGWDLEDLELPPDADTPKASANASSLF
VAPTPGMPVSQIWIQKSSLAGEHAAAGNFDTAMRLLTRQLGIKNFAPLKPLFMDLLLGSH
TYMNAFASVPAMSIAVEKNWSESASPNVRGPPALVFKFFQMDEKLKAAYKATTDGKFPEA
LRLFLNILHAIPLIIVDSRREVDEVKELIEIAREYVLGLKIEVKRKELKDNSVRQQELAA
YFTNCKLQKMHARLVLTNAMTVCYKGGNYATAANFARMLLENSPTEIQAKKARQVLQHAS
DKKDASQLNYDYRNPFVVCGETYVPIYRGQRDVSCSYCGARFVPSVEGHLCSVCELAVVG
ADASGLLCSPTQMR
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccaaattcgagacgaagagcaaccgggtgaagggtgtgagcttccacagcaaa
cgcccctgggtccttgccagccttcacagcggcgttatccagctatgggattaccgcatg
ggcactctcatcgaccgcttcgacgagcacgacggtcccgtacgcggcgtccacttccac
aagtcccagccccttttcgtatccggaggagatgactataagattaaggtctggaattat
aagacacaccggtgcttgtttaccctccttggtcatcttgattacattcgcactgtgcag
ttccatgatgagcatccatggattgttagcgcaagtgacgaccaaactattaggatatgg
aattggcaatctcggacctgcatttctgtattgacagggcacaaccactatgtgatgtgt
gcctcatttcatccaaaggaagacctggttgtttctgcatctctggatcagacaatccgt
gtttgggatattagctcactgaggaaaaaagttgcgccagctgatgatctcctacgtttg
ggtcagataaactcagatttatttggcggtgttgatgctgttgttaaatatgtcttggaa
ggtcatgaccgtggagtcaattgggcatcgttccatccaagtttgcctcttatagtgtct
ggagcagatgatcggcaagtaaaattatggagaatgaatgatacaaaagcttgggaggtg
gacacattgagaggtcacatgaataacgtctcttgtgtgatgttccatgcgaagcaagat
atcattgtatctaactcagaagacaaaagtattcgcatttgggatgctacaaaacgaact
ggtattcagacatttcgcagggaacatgatcgtttctggattcttgctacacaccctgaa
actaaccttctggctgctggccatgatagtggcatgattgttttcaaattggagagagaa
cgccctgctttctctgtcagtggagatactttacactatgtgaaagatcgtttcttgcga
gtctacgaattctcaactcagaaggacaatcaggttgttcccataagacgacctggttca
gttagtttgaaccaaggacctagaacattgtcttttagccccacagagaatgctgtcttg
atctgttctgatgtcgatggtggatcttatgagctgtatattgttcctaaagatgctgct
ggaagaggtgattatatgcaagatgcaaggaagggagtaggagcatcagctgtttttgta
gctcgtaatagatttgctgttcttgataggagcagcaatcaagccatagtgaagaatctt
aaaaatgagattataaaaaagagccctctgccaattggtactgatgctatatattatgcc
ggcactggtaatttgttgtgcagggctgaggacagggtgcttatttttgatcttcaacag
aggattgtacttggagagcttcaaactccatctgttaaatacattgtctggtcaagtgac
atggagtcagttgccttgctaggtaaacatactataataattgctaataagaaacttgtg
caccgttgcacaatgcatgaaactatccgtgtgaaaagtggtgcatgggatgacaaaggt
gtgtttatctatacaacattaaatcatatcaagtattgccttcctaatggagatggtgga
ataataaaaacactcgatgttactatttacatcaccaaggtttctggaaacaatatctat
tgcttggatcgtgatggaaagaaccatgtggtatcaatcgattcgacagagtacatcttc
aagctctccctgttccataaacgttatgatcatgtgatgaatatgatcaagaactcacag
ctttgtggtcaagctgtcatttcatatctacagcagaaaggttttcctgaagtggctctc
cattttgtgaaagatgaaaagactagattcaacctagctcttgagagtggtaacatccaa
attgccgttgcttcagcaaaagagatagatgataaggaccactggtacaggttgggtatt
gaggctcttagacaaggaaatactagcattgtggagtatgcatatcaaaggacaaagaac
tttgagaggttatcttttctttatctcataactggtaacagggagaagctgtccaaaatg
ctgagaattgcggaaatcaagaatgatattatgggtcaattccataatgccatgtatctt
ggtgatattcatgagcgtataaagatattagagaatgctggtcatttgcctctagcatat
gcgacagctgtgagccatgggcttgaagaaattgctagcaggctggctactgagttgggt
gaaaatgttcccattttacctgaagataaaaagcgttctcttctcttaccaccttcatct
ctgatgtgctgtggtgattggccattgctaagagtaatgagaggtatttttgacaatgca
ctggacactggtagggcagggaatgaggaagaggaagatgctaacaatgcggactggggt
gatgaggaattggacattgttgatgtggatgacatgatacagaatgctgatatatctgca
gagcttgaggatggaatagaaaataaagataatgaggaaggaggatgggaccttgaggat
ttggaactaccaccagatgcagatacaccaaaagcttctgcaaatgctagttcactattt
gttgctcctactcctggtatgcctgttagccaaatctggattcagaagtcatctcttgca
ggtgagcacgcagctgctggaaattttgatacagccatgcgcttgcttacccggcaattg
ggtatcaaaaattttgctcctctaaagccattgttcatggatcttcttttgggaagtcac
acctacatgaatgcctttgcttctgttccagctatgtcaattgctgttgagaaaaattgg
agcgaatcagcaagtcctaatgttagaggaccaccagcacttgtatttaagtttttccag
atggatgagaagctgaaggcagcttataaagccacaacagatggaaagtttcctgaggct
ctacgcttatttttgaatattttgcatgctattccgcttatcatagtggactcaagaagg
gaagtcgacgaagtgaaggagctgattgagattgccagagagtatgttctgggcttaaaa
attgaggtcaaaagaaaagaactcaaggacaattcagttcggcaacaagaacttgcggcc
tatttcaccaattgtaaacttcagaagatgcatgccaggctagtcctcactaatgctatg
actgtctgctataagggaggaaattatgctacagcggcaaattttgcccggatgcttctg
gagaacagcccaactgaaatccaagcaaaaaaggcgaggcaggtgcttcaacatgctagt
gataaaaaggatgctagccaacttaattatgattacagaaatccttttgtagtgtgtggg
gaaacttatgttcctatatatcgggggcagagagatgtttcttgttcgtactgtggggct
cggtttgtaccatctgttgaggggcatctttgctctgtctgcgagcttgcagtagtggga
gcagatgcctcaggtctactttgctctcctacacagatgagataa
DBGET
integrated database retrieval system
