Zingiber officinale (ginger): 122018763
Help
Entry
122018763 CDS
T08725
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog A-like isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03440
Homologous recombination
zof03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122018763
03460 Fanconi anemia pathway
122018763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122018763
03036 Chromosome and associated proteins [BR:
zof03036
]
122018763
03400 DNA repair and recombination proteins [BR:
zof03400
]
122018763
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
122018763
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
122018763
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
122018763
FA (Fanconi anemia) pathway
Downstream FA components
122018763
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
DUF2007
Motif
Other DBs
NCBI-GeneID:
122018763
NCBI-ProteinID:
XP_042432113
LinkDB
All DBs
Position
1A:complement(11231679..11242759)
Genome browser
AA seq
1218 aa
AA seq
DB search
MPLPTELPTWEIRPAADGHFHWAVASGSEVSSFPAAPPPKTLAGVDDSDRGTRLPSLADL
LILAHTQIPVGVEDDHADGGGLPIFRTASGKSVFVSDSSINRARSVLGEADSNSRGNEAH
SEVGNKDNDFQLLYTGSGKSLGLRESSSKKTAAINEGHYIREGNEAHSNNCIKDSTLPIF
GTASGKSVTIKESSIRKAAAILEGKDVNDGQLHEQGNRTFFNSMFQTSSGRTVNVSSCGL
ARATTLLGLEEDDKLFALKGFGSAQNQDSMKNIKGESSHGISSRNISCVTTSTLIIDPSN
ARLVERSPDNFLKGYCSAGSHLNSGQLQNTLAHKIDCSNFTQSPVKFQTASGRYISISND
ALNRARNLLGNSDIGTLENSRLDQCLPSNSGNNNNHNVTFCNKENIYYPCSDLESISKPA
SRTPSSIFKRKQPSSDTWKVKSEGHVLDQGIDRNFSFGNDYSGKKACINKKPEKDNFHLS
NNSIVMDDNPLHGPLVEISNNRFSSRKLQPGKMSSASPFKRPRNSRFATPLKNTSLATGF
SKLPTQSSCHSQISTHYPCHKRKNIKDFFGSAPSHQYLLESLSSGVSSMNADNALNYKFQ
DASSHDGIGIEAFQDMLLQSGASLSNATKEWVTNHYRWIVWKLACYERCYHNQTKNKFFT
VPNVLEELKYRYEREFNHGHRSAIKRILDGDASPSSMMILCVSAICSGHPEISKTDDKNS
GSEVTKQSNNISSTLERSIYDARIELTDGWYSLYALLDVQLSKQIFTGKLFVGQKLRIWG
AGLFGWVGPVSSLEASKTVHLLMNINGTYRADWAEKLGFCNCRGAPLSFNCIKVGGGRVP
RTLVGITRVYPLLYKERFSDGGYIVRSERLERKALQQYDQRRCNIAEAILAERIDVVADV
DSNDEGAKLYKILETTAEPEVLMADMTPQQLISFSAYQTKQNEIRQSDMEKKIEKTLKDA
GLCSRDVTPFMRVKVAGLTSKHSCKKGKFREGLITIWNPTEDQKVDLVEGKIYDVAGLLP
MNFCMNVLYLQGGGSSTGWKSLPLTEAKKYEPFFKPRKSIRLSNLGAIPLTSEFDIAALI
LHVGDVCISGRRKKQWVFVSDGCTCNSTLQYQEQHDCLLAISFHSLFTGNDLSALFSHHH
EGTVVGFFNLVKRARDQSNHLWVAEATENSTFSACYNLSSNCHLKADATFAQKWAKLSSS
IIQELKERILYIVGHDRV
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgccgaccgagctcccgacttgggagattcgccctgccgccgatggtcacttc
cattgggctgtcgcctccggctccgaggtatcttccttcccagcagctccgcctcccaaa
accttagctggcgtcgacgacagcgaccgtggtactcgccttccttcgttggcagatctc
ttgatcctagctcatacgcagattccagtaggtgttgaggatgaccatgcggacggaggt
gggttgccgatttttcgtacggcgtcaggaaaatcggttttcgtgagtgacagttctata
aatagagctaggtctgttctcggtgaagctgacagtaatagcagaggcaatgaagctcat
tcagaggttggcaataaagacaacgacttccaattgctttatactggatctgggaagtca
cttggtctaagagaatcttcaagtaagaaaacagcagctattaacgaaggacattacata
agggagggtaatgaagcacattcaaataattgtattaaagatagtaccttaccaatcttt
ggtactgcgtctgggaaatcggtcaccataaaagaatcttcaattaggaaagcagcagcc
atccttgaaggaaaggatgtgaatgatggacaattacacgagcaaggtaacaggactttc
ttcaattccatgttccagacaagctcgggtagaactgtaaatgtatcttcttgtggtctc
gcaagagcaactactttattgggcttggaagaagatgacaaactttttgccttaaaaggt
tttggaagtgcacaaaatcaggattctatgaagaacatcaagggggaaagttcacatgga
atttcttctcggaacattagttgtgtcactactagcacactcattattgatccttccaat
gctagattagttgaaagaagtccagataattttttaaaaggttattgctcagctggcagt
catttaaatagtggccaattacaaaataccctggcacataaaatagattgttctaatttt
actcagtcaccagttaagttccaaacagctagcggaaggtatatttcaatttccaatgac
gcgctaaatcgtgcaaggaaccttcttgggaactcagatattggaactttggagaacagc
agactcgatcagtgtttgccctccaattcgggaaacaacaataatcataatgtaactttc
tgtaacaaggagaacatctattatccttgttctgatttagaatcaataagcaaacctgca
tccagaaccccatcttctattttcaagagaaagcaaccatcatctgacacctggaaagtt
aaatctgaaggtcatgtgctagaccagggaattgacagaaatttttcatttggaaatgat
tattctggcaagaaagcttgtatcaataaaaagcctgaaaaagataacttccatttatct
aataactccattgtgatggatgacaatcctctgcatggacctttggttgagatatcaaac
aatagatttagtagccgaaagctgcaacctggaaaaatgagttctgcctctccatttaaa
aggccacgaaattccaggtttgcaactcccttgaagaacacttctttggctactggtttc
tccaaactaccaacacaaagtagctgccacagtcagatctctactcattacccgtgtcat
aaaagaaagaatattaaagacttctttggtagtgctccaagtcatcaatatttgctggaa
tccctatcttctggagtcagcagcatgaatgcagataatgcactgaactacaagtttcaa
gatgcatccagtcatgatgggattggcatagaagcttttcaggatatgctgcttcaatct
ggtgcatcattatctaatgcaacaaaagagtgggttacaaatcattacagatggattgtt
tggaagcttgcatgttatgagaggtgctatcataatcaaactaaaaacaagttttttaca
gttcccaatgttcttgaggaattgaaatacaggtatgaaagggaattcaaccatggtcat
agatcagccattaaaagaattttagatggagatgcatcaccttcatctatgatgattcta
tgtgtttcagcaatctgttctggtcaccctgaaatatcaaagaccgatgacaaaaattct
gggtctgaagttactaaacaaagtaacaacattagctcaacattagagagaagtatttat
gatgccagaatagagcttactgatggatggtattctttgtatgctttgctagatgtccag
ctgtcaaaacaaattttcactggaaagttgtttgttggccaaaaacttcggatatggggt
gctggtttatttggttgggttggacctgtttcatctcttgaggcttcaaagactgttcat
ctgctaatgaacataaatgggacctacagggcagattgggctgagaagttgggattttgc
aattgtcgtggtgctcctttgtctttcaattgtattaaagttggtggtggtagagttcct
cgaacattggtcggaatcacaagggtttacccccttctatataaggagaggttttctgat
ggtgggtatattgtaagatcagaaaggttggaaaggaaggcgcttcagcaatacgatcag
cggagatgtaacattgcagaggctattttagctgagcgaatagatgtggttgctgatgta
gacagcaatgatgaaggggcaaaactctacaaaatacttgagacaactgctgagcctgaa
gtcctgatggcagatatgactccacagcaactaatttctttctcagcttatcagacaaag
caaaatgagattaggcaatcagacatggaaaagaagattgagaaaacgttaaaggatgcc
ggtctttgttcaagagatgttacaccctttatgagagtgaaagtggcaggtttaactagt
aaacactcatgcaaaaaaggaaagttcagggaaggtctgataacaatatggaatccaact
gaggatcagaaggttgatcttgtagaaggaaaaatatatgatgttgcaggacttctgcca
atgaacttttgtatgaacgttctttatctacaaggtggcggatcttctacaggatggaag
agtttgcctttaacagaggccaagaaatatgaacctttctttaaacctcgcaaatccatc
aggctgtcaaatttgggtgccatacctctaacaagtgaatttgatattgcagcactaata
ctacatgtcggagatgtttgcatatctgggcgtcggaagaaacaatgggtttttgtttca
gatggatgcacatgcaactcaacattacaatatcaagagcaacatgattgtctacttgct
atcagtttccactctctatttacaggcaatgatttgtctgcattattcagtcaccaccat
gaaggaacggtagttggtttttttaatctggtcaagcgagcaagagaccaatcaaatcat
ctttgggttgcagaggcaactgaaaattctaccttttctgcatgttataatctttctagt
aattgtcatctgaaggcagatgcaacatttgctcagaaatgggcaaaattatcttcctca
atcattcaggagctgaaagagagaattctatatatagttggacatgatcgagtgtga
DBGET
integrated database retrieval system
