Zingiber officinale (ginger): 122018829
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Entry
122018829 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 29-like isoform X1
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122018829
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122018829
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Helicases
122018829
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
122018829
NCBI-ProteinID:
XP_042432196
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All DBs
Position
9A:52391847..52400338
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AA seq
820 aa
AA seq
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MARPRGGISARKPADGEVEFHADEAEMKAMVGVSSKAELKRRMKESKKAKSGGFESLGLC
LEVYRGVKRKGYRVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQKLRQHVPQ
AGVRALILSPTRDLAMQTLKFTKELGRFTDLRTSLLVGGDSMENQFEELAQNPDIIIATP
GRLMHHLSEVEGMSLRTVEYVVFDEADSLFGMGFAEQLHKILLQLSETRQTLLFSATMPS
LLAEFAKAGLRDPELVRLDLDTKISPDLKMVFFTMRHEEKLAALLYLVREQISSDQQTLI
FVSTKHHVEFLNILFREEGIESSVSYGDMDQDARKIHISRFRARKTMILIVTDVAARGLD
IPLLDNVLNWDFPAKPKLFVHRVGRVGRAGRTGTAYSFVTSEDMPNLLDLHLFLSKPLRP
APTEEEVLDDMERAYTKIDEAIANGETIYGRFPQPILDLTSERLREVIEANAELVSLQKV
STNAFRLYSKGKPLPSSESIRRMKDLPREGLHPIFRTLLGPNELAALAFSERLKAFRPKQ
TILEAEGEAAKAKNAQGSNQWLEVMKKKREVHEEIIKSAHHKRCMDQAMKDTEMTSAPLV
ELEKKEVRSAKRKVVNFKDDEFYISAIPTNQHLEAGLSVKNDEGFGSNRLDAAVLDLAAD
DRSGLQKQKSQFHWDKRSKKYIKLNNGDRVTASGKIKNESGSKIKFDKTGLYKKWKERSH
RKISLGGTDTDEATGSTERGNKLLQQQHFKGGRKRWSLPNANVPSELKDPEHVRKIRQKK
ATKIMRLKSKPSKGIKGKGKGKGKGKANGKGKKFGKHKGR
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggcgagaccgcgcggcgggatctctgcgagaaagccggcggatggcgaagtggaattc
cacgctgatgaggccgagatgaaggcgatggtaggcgtcagctcgaaggcggagctgaaa
cggcgtatgaaggagagcaagaaggccaagtctggcggcttcgagtcgctggggctctgc
ctcgaggtctaccgtggcgttaagagaaagggataccgcgtgccgaccccgatccagaga
aaaacgatgccgctcatcctatccggcgccgatgtggtcgcgatggcccgaacggggtcc
gggaagaccgccgcctttctcgttcccatgcttcagaagctccggcagcatgtgccgcag
gccggcgtacgtgcgcttatcctatcgcccactagggacctcgccatgcagacgcttaag
ttcaccaaggagctcggcaggttcactgatcttcgcaccagtctattggttggtggtgat
agcatggaaaatcaatttgaagagctagcacagaatcctgatattataattgctactcct
ggccgacttatgcatcatttgtcagaggttgagggtatgtcactgcgtactgtggaatat
gttgtatttgatgaagcagacagtctctttggaatgggttttgccgagcagttgcacaaa
attcttttacagcttagtgagacacgtcaaactttactttttagtgctaccatgccaagt
ctactcgctgagtttgcaaaggctggtcttcgcgatccagagcttgtgcgacttgatcta
gacactaagattagcccagatcttaagatggtattcttcacaatgcgtcatgaagagaaa
cttgctgctttgttgtacttagtcagggaacaaattagttctgatcaacagacattgata
tttgttagtaccaagcatcatgtggaattcctaaatattctttttagggaagagggtatt
gaatcttctgtctcgtatggtgacatggatcaggatgctcgaaagattcatatttcaagg
ttcagagcacgaaagactatgattcttattgtgactgacgttgctgcaaggggccttgat
attcccttgcttgataatgttttgaactgggacttccctgcaaaacctaagcttttcgta
catagagttggtcgagtgggtcgggctggtcgaacaggtactgcttattcctttgttaca
tcagaggatatgcctaacctattagacttgcatcttttcctttctaaaccacttagacct
gcccctactgaggaggaagttctcgatgacatggagagagcatacacaaagattgatgaa
gcaattgcaaatggagagacgatatatggtcgttttcctcaaccaattttagatcttact
tctgaaagacttcgggaggtgattgaagcaaatgcagagctagtttcattgcagaaggtg
tctactaatgcatttcgcttatattctaaggggaagcctttaccttcaagtgaatccatt
agaagaatgaaggatttacctcgtgaggggctgcacccaatcttccgaactttacttgga
ccaaatgaacttgcggcactagctttttctgaacgattaaaggcgtttaggccaaagcag
actatattagaggctgaaggggaagctgcaaaggcaaaaaatgcacaaggttcaaatcaa
tggcttgaagtgatgaagaagaaaagagaagttcatgaagagataattaaatcggcacac
cacaagcgttgtatggatcaggcaatgaaggatacagagatgacaagtgctccactagtt
gagttggagaaaaaagaagtacgcagtgctaaaagaaaggttgtcaactttaaggatgat
gaattttatataagtgcaattccaacaaatcagcatctggaagctgggctctcagtcaag
aatgatgaaggatttggatcaaacagattggatgctgctgttctcgatctagctgctgat
gataggagtgggttacagaagcaaaaatctcaatttcattgggataagagaagcaaaaaa
tacataaagttgaacaatggagatcgagtcacagcttcaggcaagatcaagaacgaaagt
ggttccaaaatcaagtttgataaaacaggattgtacaaaaaatggaaggaacgttcccat
cgaaaaatatctcttggaggaacagatacagatgaagccactgggtcaacagagagggga
aataagcttctacaacagcagcatttcaagggcggaaggaaacggtggtccctccccaat
gccaatgtaccatccgagctgaaagaccctgagcacgtacggaagatcagacagaagaag
gccaccaaaatcatgcgtttgaagagcaaaccctctaaaggcatcaaggggaaagggaaa
gggaaagggaaagggaaagcgaatggaaaggggaagaaatttgggaaacataaaggcagg
taa
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