Zingiber officinale (ginger): 122018908
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Entry
122018908 CDS
T08725
Name
(RefSeq) nuclear poly(A) polymerase 4-like
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122018908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122018908
Enzymes [BR:
zof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
122018908
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
122018908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
122018908
NCBI-ProteinID:
XP_042432310
LinkDB
All DBs
Position
9A:complement(105223049..105232234)
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AA seq
777 aa
AA seq
DB search
MGSSSEMGSAPPPFPIQYGITKPISTAGPTEADLKRTVELERLLVDAGLYESKEESTKRE
EVLEELDKIVKNWVKQLTHQRGYSDQMVEEANAVIFTFGSYRLGVHGPGADVDTLCVGPS
YVNREEDFFIIFHDILAEMEEVSELHPVPDAHVPVLKFKFREIPIDLLYASISQLVVPQD
LDISNGSVLYDVDEATVRSLNGCRGADQILRLVPNVVNFRTTLRCIKFWANRRGVYSNVT
GFLGGVNWALLVARVCQLYPNAVPSMLISRFFRVYTQWRWPNPVMLCAIEENELGFPVWD
PRKNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQMGNKICEEIELNKACWTAL
FEPYRFFEAYKNYLQVDIVAADAEDLRLWKGWIESRLRQLTLKIERDTYGMLQCHPYPNE
YVDPSKQCSHCAFFMGLQRKQGVNIQEGQQFDIRGTVDEFRHEVNMYMFWKPGMEIYVSH
VRRKQIPSYVFPDGYKRPCPSRPMFLQHVDKTMSEEECQGGSSERRRKRKVDVECLGTIP
DKRASISPEKEKSLKSDGQGPVSIEENQSQSRTDAQGEYTCKQMGGDSVQQPKMKIETSC
LCAGPSKMASISPKHDHTIDGRDHVVKVNQNDNMLGYHEDHVGPGRQLQQSVRSIMDGAV
VRSYENYSKKLANGTSCLECEGASTRNVASDLETKKQLVLQQSVGCDSKIADESQILQDG
RQFTSVGSDQIVNEPAQDSMADELEPNITVRVAIKSHGVSTDAPQKSALRLSLTTTA
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgggtagttcttcagaaatgggtagtgcacctccacctttcccaatacagtatggtata
acaaagccaatctcgactgctggacctactgaggctgatctcaagaggactgttgaactt
gaaaggctcttggttgatgctggactttatgagagcaaggaagaatctaccaagagggag
gaagtattagaagaactagataagattgtcaaaaattgggtgaaacaattaacgcatcaa
aggggctattctgatcaaatggttgaagaagcaaatgctgtcattttcacgtttggatct
tatagattgggggttcatggaccaggggctgatgttgacactttatgtgttggaccttcc
tatgttaaccgagaggaggatttctttattattttccatgatatattggctgaaatggag
gaagtctctgaactacatccagttcctgatgctcatgttccagtcctcaaatttaagttc
cgggaaatacccatcgatttactctatgctagtatatcacagttagttgttccacaggat
cttgatatttcaaatgggtctgtgctttatgatgttgatgaggcaactgtcagaagtctt
aatggctgcaggggagcagaccaaatcttgcgtctggtgccaaatgtagtgaattttcga
accactctcagatgtataaaattttgggcgaatagacgcggtgtttattccaatgtcact
ggatttcttgggggtgttaactgggcactgttggttgctcgggtctgccaactttaccct
aatgctgtgcccagtatgctaatttcccgatttttcagagtttatacacagtggcgttgg
ccaaatccagtgatgttgtgtgctattgaagaaaatgagcttggctttccagtttgggat
ccacgcaagaacccacgagatcggactcaccacatgcctattattacaccggcatatcca
tgcatgaactctagctacaatgtatcaacaagcacattgagggtcatgatggaacaattt
caaatgggcaacaagatctgtgaggaaattgagttgaataaggcttgctggactgctctg
tttgaaccttaccgtttctttgaggcatacaaaaattatctccaggtcgacattgttgct
gctgatgctgaggatctaagactgtggaagggttggatagaatctcgtcttaggcagttg
acgctcaagattgagcgtgatacttatggtatgctgcagtgccatccatacccaaatgag
tatgttgatccatccaaacagtgctcacattgtgctttcttcatgggattgcaaaggaaa
caaggggttaacatacaagaaggtcaacagtttgatattcgcggtactgttgatgagttc
aggcatgaagtgaatatgtatatgttctggaaacctgggatggaaatatatgtttctcat
gtacgaaggaagcaaataccttcttatgtgtttcctgatggctataagaggccttgtcca
tcgagaccaatgttcctgcagcatgttgataaaactatgagtgaagaggaatgccaaggt
ggatcctcagagcggcgacgtaagaggaaagttgacgttgaatgcttaggtactatccca
gataaacgtgcttcaattagcccagaaaaggaaaagtctctaaaatcggatggacaaggt
cctgtaagcatagaagagaatcaaagtcagagtagaacagatgcccaaggtgaatacact
tgtaagcagatgggtggtgattctgtacaacaacctaagatgaaaattgaaactagttgc
ttgtgtgctggacctagtaaaatggcatcaattagcccaaaacatgaccacacaattgat
ggaagagatcatgtagttaaagtgaatcagaatgacaatatgttaggttaccatgaggat
catgttggtccgggcaggcaattgcagcagtcagtcaggagcataatggatggtgcagtg
gtaagatcttatgagaactacagcaagaagttggcaaatggaacttcatgcctcgaatgt
gaaggagcttccactagaaatgtggcatctgatctagagactaagaaacagttggttctg
cagcaatctgttggatgtgatagcaaaattgcagatgagagtcaaatattgcaagatggg
agacagtttacaagtgtagggtcggaccagattgtgaatgaacctgcacaagatagtatg
gcagatgagttggagccaaacatcacggtcagagtagcaattaaatcacacggagtgtct
actgatgctcctcagaagtctgcattaaggttaagtctgactactacagcttaa
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