Zingiber officinale (ginger): 122018983
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Entry
122018983 CDS
T08725
Name
(RefSeq) nuclear pore complex protein NUP93A-like isoform X1
KO
K14309
nuclear pore complex protein Nup93
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122018983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122018983
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122018983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nic96
TPR_12
TPR_14
TPR_1
TPR_2
PrmA
TPR_16
Sel1
TPR_8
Motif
Other DBs
NCBI-GeneID:
122018983
NCBI-ProteinID:
XP_042432419
LinkDB
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Position
9A:complement(303426..314397)
Genome browser
AA seq
862 aa
AA seq
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MANDQEMSGWTELLHSSTKLLEHAGPSSHFPPLQRNLDQLESLSKKLKSKTLRAEAPSQS
ISATRLLAREGIDAERLARDLKSFELKTTFEDVFPSEATNVEEYLQQVHEMAMVSSIQEA
QKDNLRSFNEHMMRVLEEDWQKEKREFLQSLSRLSTLPRGNSGALSGGLVRNVQMPSQIS
SPNVPKGPSVMEVVALTNKPIIDKKATVYAEIVSNLNEARARGLPFKPATAFKTAYENLN
LDFSGSKSVTLQKIWHLTQALVGEYLNYQHKLSRKMILITGARHHLEWGHEKYILDTIKA
HPAQAALGGAVGNLEKIQAFLRVRLRDHGVLDFDAGDKSRQPPVDTTWQQIYYCLRTGYY
NEAKKVAELSRAAHHFAPQLAEWIASSGSISPDTASAASEECEKLLRMGDRAGRPGYDRK
KLLLYAMISGNRRQIDRLLRDMPNLFNTIEDFLWFKLSAVRDFSGGSSSIVLSEGLVPYS
LDDLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAVVYLSKEVGEEGYNVDSVHIS
IALADHGVLSDGIGAFSKRGIMDACAEVASIIKQYGSVYLRQGNLELALEYYAQAAAAMG
GGEVSWRAQGSNDQQRQQNKMLSQLLTEILLKDGGVSLLLGPRGTGEEGSLSKYMMDQNS
RKQFLLEAARQCQESGLHDKSIEIHKRVGAFAVALETVNKCLSDAICAISRGKLDGDSQA
ASLIHSGNDILESYRISSDASLQEREPVSEQQTVLRELEAILQVHKLARAGQHVDALQEI
VKIPFLPLNPLVPDVSYDIRSLSPYVQACVPDILKITLVCLENVRDSDGTLRTLKSKIAN
LVANNMNSNWPRDLMERVARSI
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgatcaggagatgagcgggtggacggagctcctccactcttccaccaagttg
ttggagcatgccggcccttcgtcccatttcccccctctccagcggaacctcgatcaattg
gagtcgctttccaagaagctgaaatcaaagaccctccgcgcggaagccccctctcagtcc
atctcggccaccaggttacttgcccgggaagggatagatgcagaacggttggctagggat
ctgaagtctttcgagctgaagacaacatttgaggatgtctttccttctgaggcgacaaat
gtcgaggagtatttgcagcaggttcatgaaatggcaatggtttcatccatccaagaagct
caaaaggacaatttgagaagcttcaatgaacacatgatgcgagtcttagaggaggactgg
caaaaggaaaagagagaatttttgcaaagcttaagccgactctctacattgccaagggga
aacagtggtgctttaagtggtgggcttgttcggaatgttcagatgccatctcaaatatcc
agtcctaatgttcccaagggcccatcagtcatggaagttgtggctctaactaataagcca
ataatcgataagaaagctacagtatatgctgagatagtgagtaatctaaatgaggccagg
gcacgtggattaccttttaaacccgctacagctttcaagacagcttatgagaatttgaac
ctcgatttttctggtagtaagtcagttaccttgcagaaaatatggcacctcacccaggca
ttagtgggtgaatatttaaattatcaacataaattgtcaaggaaaatgattctcataaca
ggtgcaaggcaccatcttgaatggggccatgagaaatatatccttgataccataaaagcc
catcctgcacaggctgctctaggtggagctgttggcaacctggaaaagatccaggcattt
ctacgggtgcgacttagagatcatggtgtgctagattttgatgcaggggataagtctagg
cagcccccagttgacacaacctggcaacagatttattattgtctaagaacaggctactac
aacgaagcaaagaaagttgctgaattgtcacgtgctgcccaccattttgctcctcagctt
gctgagtggattgcttctagtggttcaatttcaccagatactgcttctgctgcttccgaa
gagtgtgaaaaattgttaagaatgggtgatcgagcagggcggcctggttatgacaggaag
aaattgttactatatgcaatgatttctggcaatcgacgccagatagacaggttgcttaga
gatatgccaaatcttttcaatactatagaagatttcttgtggttcaaattatcagcagta
agggacttctctggtggatcctcttccatagttctaagtgaaggcttggtgccatatagc
ctagatgatcttcaaagttatttgaataaatttgagccatcatactatacaaaaaatggg
aaagaccctttggtttatccatatgttttacttttgagtattcagttgcttccggcagtt
gtatatttgtctaaagaagtaggagaggagggatacaatgtggattctgtgcatatatca
atagctttagcagatcatggagttctttcggatgggattggagctttcagcaagagagga
attatggatgcttgtgctgaagttgcaagcataattaaacaatatggttcagtgtatttg
cgccaaggtaatcttgaattagctctagaatattatgctcaagcagctgctgctatgggt
ggtggagaagtgtcatggcgtgcacagggtagtaacgaccagcaacggcagcaaaataag
atgttgtcacagctacttacagagatattgctaaaagatggtggcgtttctcttttactt
ggtccaagaggcactggggaggaaggttcacttagtaaatatatgatggatcagaatagc
cgaaaacagtttttacttgaagctgctcgccaatgccaagaatctggactccatgataaa
tctatagaaatacacaagcgagttggagcatttgctgtagcattggaaacagttaacaag
tgtctctcagatgcaatctgtgccatttcacgaggaaagttagatggtgatagtcaagct
gccagtctgattcattcaggcaatgatatattagagagctacaggatttcttctgatgcc
agccttcaagaaagggaacctgtttctgaacagcaaactgtgttacgggagcttgaagct
attctacaagtgcataagctagcgagagctggccagcatgtggatgctttgcaggaaatt
gtcaaaatcccattcctcccgttaaatcctctggtacctgatgtttcatacgatatccgt
agtttgtctccctacgtacaagcatgtgtgccagatatcctcaaaatcactcttgtttgt
ctggaaaatgttagagattctgatggaacattacgcactttaaagtctaagattgccaac
ctggtagcgaacaatatgaatagcaattggccacgtgacttgatggagagggttgctcgg
agcatatga
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