KEGG   Zingiber officinale (ginger): 122019154
Entry
122019154         CDS       T08725                                 
Name
(RefSeq) bromodomain and WD repeat-containing protein 1-like isoform X1
  KO
K11797  PH-interacting protein
Organism
zof  Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:zof00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:zof04121]
    122019154
Ubiquitin system [BR:zof04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     122019154
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_EML WDR55 Beta-prop_SCAP WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st Bromodomain Beta-prop_RIG_2nd Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 Beta-prop_HPS5 WD40_MABP1-WDR62_1st Agenet Auxin_resp VPS8_N
Other DBs
NCBI-GeneID: 122019154
NCBI-ProteinID: XP_042432587
LinkDB
Position
1A:12326009..12351941
AA seq 1755 aa
MAPSKCKPPGDETPTTVAPLKFSRRMFEKLNSVDQRMTPEIDIREVYLLIMHFLSSGPCK
RTYEQLQNELLEHKLLPRRYHAWYSRSGAPSGDEDDDGLSLPLCYIKLTQRYPHIEKDHI
LKLLKQLLVNSSPLPAMIGGVSNAAVFPTLTGSGSFSLLASDRDKEIKSSNKLPRYLRWP
HMHAGQVHGLNLREIGGGFTKHCRAPSIRAACYAIAKPSTLVQKMEIIKKLRGHQNAVYC
ATFDRSGRYVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNAVVASSANDFI
IRVWHLPDGHPISVLKGHTGAVTAIAFNPRPAAVYQLLSSSDDGTCRIWDARQSNANPRI
YIPKPLDTLAGKVTDPSPSAGQQTHQILCCAFNANGTVFVTGSSDTYARVWNAYKSNLDD
PEQSNQEMDLLCGHENDVNYVQFSGCAVGSRSSLGDTLKEDNLPKFKNSWFTQDNLVTCS
RDGSAIIWIPRSRRSHGKVGRWTRAYHLRVPMPPMPPQPRGGPRLRCQPTPRGVNMIVWS
LDNRYVLAAIMDCRICVWNASDGSLLHSLIGHEESTFVLDVHPFDPRIAMSAGYDGKLII
WDIWEGMPVRIYETGRFKLVDGKFSPDGISVILSDEVGQIFIIATGQGDSQKDAKYDQFF
LGDYRPLMQDTSGNVLDQETQLPPHRRNIQDLLCDSGMIPYPEPYQSMYQRRRLGILGIE
WRPGSLKLAVGPTYNASIGDFQALPIVDLEQWVEPLPEIVEAIDWEIENDVQSDDADSEY
NLTDEYSSQAGQESLSSSSCGEAESSAGNSEGDNDGKVGVKRSKRKKHSYETELTTSSGR
RVKRRNFDECNGASMSRSHRTRRSMNGRLKRLKASKSEPSRPQRIAKKNALTFFSKLTSV
STDEDHEPDSNFSESESMFPDSKTQSFESERSLKFNLLSGVKESIKDEYEAAAIPSEVIN
KQDSPVSKRRLVLKLPCHVVSGTVISEWPKQDNLSISLPTSNSVVNSHRIPESEIAETVS
SQNEIPSHRHFLVDHQTSMIKWGEVKQRSSKRPRVGDMVTWAAANTSVDDPNTAGDDTIG
IISGDECRTSISWKQTNEKSNDRYAAGNKGVDATPHLLSLESMSLVQQSSISIQESEQVV
LPHKCVDIRNESVEAENLNPVNHECKVLNESSEVYELVPNKTVNYFGSKCSFDVDPQVDE
TMKTTHPNMWFKTRGSVQEFNSSSLKLKSSVLNSLRSAEDDLVSDSPTPSDQDLDLAADE
DEGTNRKSLEPGKSNNISENSEGWTTTNASLSVSHDCLDLKSYPKMYDAVYKRTKPSKGK
ESCITDVQVKQETTSDSVDHDEATLLLSGKIRNSNRKKPTGGRAPNHDLSCSMNNFDNNF
FSSLGASTSRGKSASSSCNQFLVDDWKSTSKMPVGLRSVRNRRENYNTTDFRCMDKKSHQ
SLRKLSWLLLLEHEECYRYIPQKGDEVAYLIQGHREYIESTATTEVGPWKSIKGLKAVEF
CKVQELEYSTLPGSGDSCCKLTLEFKDPSSCGFKKTFRVTLPELNDPDFLVERLRYDASI
ERNWTHRDKCQVWWKDADGSGGSWWSGRILAVKPKDSQFPDSPWEKYVVQYKDDSSGQHL
HSPWELHDVNTHWEHPSISNETRNALLYYISKIEQASIRNQDYHGVQKMNQVAQKSNFLN
RFPVPLSLEVIKRRLENNYYRTVDAVKHDSDVMISNAETHFIKSAEMKSKIKRLKESIKR
TFSSLTDEKQTKESS
NT seq 5268 nt   +upstreamnt  +downstreamnt
atggctcccagtaaatgcaaacctcctggagatgaaactcctaccactgtggcacctttg
aagttctcaagaagaatgtttgagaagctcaactctgttgaccaaagaatgacgccagag
attgatattagggaagtttatcttttgatcatgcattttttgtcatctgggccatgtaag
aggacatacgagcagctgcagaatgaacttttagagcacaaacttttacctagaaggtac
catgcttggtattcacgttctggtgcaccaagtggtgatgaagatgatgatggcttgtca
ctacctctttgttatatcaagttgactcagaggtatcctcatattgaaaaggatcacata
ttaaagcttttgaaacaattattagttaattcatctcctttgcctgccatgattggagga
gtttcaaatgctgctgtttttcctacgcttacgggatctggttccttctctcttcttgct
tccgacagagataaagagattaaaagctccaataagttgccacgttacttgcgttggcca
catatgcatgctggccaagttcatggattaaatttaagagagataggtggtggtttcaca
aaacactgtcgtgctccatcgattcgtgctgcatgttatgcaattgctaaaccatcaact
ttggtacaaaaaatggagatcataaaaaagttaaggggacatcagaatgctgtctattgt
gctacatttgatcgttctgggcggtatgtaataactgggtcagatgatcgccttgtgaag
atctggtcaatggaaactgcattttgtctagctagttgccggggacatgaaggtgacatt
actgacctggctgtgagttcaaataatgctgtggtggcatcttctgcaaatgactttatc
attagagtttggcatctacctgatgggcatccaatatcagtgctgaaagggcacactgga
gctgtaactgccatcgcttttaatcccagacctgctgctgtttatcagctactctcatcc
tctgatgatggaacatgtcgtatatgggatgccaggcaatcaaatgcaaatccacgcatt
tacatcccaaagcctttagacactttagctggaaaggtcactgatccctctcctagtgct
ggtcaacaaacacatcagatcctttgttgtgcattcaatgctaatgggactgtatttgtt
actggtagctctgacacatatgcccgggtatggaatgcttataagagcaatttggatgac
cctgagcaatcaaaccaggagatggatcttttgtgtggtcacgagaatgatgtcaattat
gtacaatttagtggttgtgctgtggggtctagatcttcccttggtgatactctgaaagaa
gataatctacctaaatttaaaaattcctggttcactcaagacaaccttgttacctgctca
cgtgatggcagtgcaattatttggattccaagatcccgacgatctcatggaaaagttggg
cgctggactcgtgcttatcatcttagagtccctatgccacctatgcctccccaacctcgt
ggtggtcctcgtctaagatgtcagccaactcctcgtggtgttaatatgattgtttggagc
ttggataatagatatgtgcttgctgctatcatggattgtagaatatgtgtctggaatgct
tcagatggtagcttactccattcattgattggccatgaggaatctacatttgttttggat
gtgcacccttttgatccacggatagctatgagtgctggctatgatggaaaactgatcatc
tgggatatatgggagggcatgcctgtgcggatatatgaaactggccgtttcaagttggtt
gatgggaaattctcaccagatggaatttcagttattctctcagatgaagttggtcaaata
tttatcattgcaactggtcagggcgattcacaaaaggatgccaaatatgaccagttcttt
cttggagactatcgaccccttatgcaagatacaagtggaaatgtgttggatcaggagacc
caacttccaccacacagaaggaatattcaggatcttctctgtgattcgggtatgattcca
tatcctgaaccttaccagagcatgtatcaaagacgccgtttaggtattcttggtattgag
tggcgccctggttcactgaaacttgcagttggtccaacctacaatgctagtattggtgat
tttcaagcactaccaattgtggatctagagcagtgggttgagcctttaccggagattgtg
gaagctatagattgggaaattgaaaatgacgtgcagagtgatgatgctgattctgaatat
aatttaactgatgaatattccagccaagccggtcaagaaagtttgagcagcagttcatgt
ggggaagcagaaagcagtgccggaaatagtgaaggcgataatgatggaaaggtaggcgtt
aagagatctaaaaggaaaaagcactcatacgaaactgagctcacaacttcatctggtagg
cgagtaaaaagaagaaactttgatgaatgtaatggtgcttctatgtcaaggtctcacaga
actaggaggtccatgaatgggcgtttgaaaagattgaaagcctctaaatcagagccttca
aggccacagagaattgctaagaaaaatgctcttactttcttctctaaattaacaagtgtt
tctacagatgaagatcatgaaccagacagtaatttctctgaaagtgaatcaatgttccca
gattcaaagacccaaagtttcgagtctgaaagatcactgaaatttaatctgcttagcggg
gtgaaggagagcatcaaagatgagtatgaagccgctgcaataccttctgaagtcatcaat
aaacaggatagtccagtaagcaagaggaggttggtccttaagctgccatgccatgttgtc
tctggaactgtgatatctgagtggcccaaacaggataatttgtctatatccttacccaca
agtaattctgttgtcaatagccatcgtatacctgaaagtgagatagctgaaacagtcagc
tcgcagaatgagattccctcccaccgtcatttcttggtggatcaccagaccagtatgatt
aaatggggagaagttaagcagcgctcttcaaaacgcccaagagttggtgacatggtaaca
tgggctgctgcaaatacaagtgtagatgaccctaacacagctggagacgacactattgga
attatatctggggacgagtgtcggacctcaatttcttggaaacaaactaatgagaaaagc
aatgacagatatgcagcaggaaacaaaggagtggatgccaccccacatctgctttctctt
gaaagtatgtctttggttcagcaatcatcaatttctattcaagagtcagaacaggtggtg
cttccacataagtgtgttgacattagaaatgaatctgttgaagcagagaacttaaatcct
gttaaccatgaatgcaaggttctaaatgaatcatctgaagtatatgaactggttccaaat
aaaactgtcaattattttggcagcaagtgtagttttgatgtcgaccctcaggtagatgaa
actatgaagaccactcacccaaatatgtggttcaaaacaagaggatcagtacaagagttt
aatagttcatccttgaagttaaaatcttcagtactgaacagtttgaggagtgcagaggat
gatcttgtctcagacagtccaactccatctgaccaagatttggatttggcagctgatgag
gatgaaggaaccaacagaaagagtttagaacctggaaaatctaataatatatcagaaaat
tcagaaggatggacaaccacaaatgccagtttgtctgtttcccatgattgcttggactta
aagtcttatccgaaaatgtatgatgctgtttataagaggacgaagccatccaagggaaag
gaaagttgcataactgatgtccaagttaagcaagaaactacttcagactctgttgatcat
gatgaagcaacgttgctgttgagtggtaagattagaaattctaacagaaaaaaacccact
ggtggaagggctcctaaccatgatctaagctgtagcatgaataactttgacaataatttt
tttagttctttaggagcttccacaagcagaggaaagtctgcatctagttcatgtaatcaa
tttttagttgatgattggaaatcaacatcaaaaatgcctgttggtttaagatctgtgaga
aacagaagggagaactacaatacaactgatttcagatgtatggataagaaaagccaccaa
tcgttgcggaagctttcatggcttttattgttagagcatgaggagtgctatagatatatt
cctcaaaaaggtgatgaagtggcctatttgatacagggccatcgtgaatacattgaaagc
actgctacaactgaagtaggtccatggaaatcaatcaaaggcttaaaggctgtcgagttt
tgcaaagtacaagaacttgaatactctacacttcctggatctggtgatagctgctgcaaa
ctaacccttgagttcaaggatccttcatcttgtgggttcaagaaaactttccgagtcaca
ttgcctgaactcaatgatcctgactttctcgtggaaagattacgctatgatgcttccatt
gaaaggaattggacccacagagacaagtgccaggtatggtggaaggatgctgatggatcg
ggtggaagttggtggagtggtcggatcttagctgtaaaacctaaagattctcagtttcca
gatagcccttgggaaaaatatgtagtacagtacaaggatgattcttctggacagcattta
catagtccttgggaacttcacgatgtcaatactcattgggagcatccttctattagtaat
gaaaccagaaatgcacttttatattatatttccaagatagaacaggcatcaataagaaat
caggattatcatggtgttcaaaagatgaatcaggtggctcagaaatcaaatttcttgaac
agattccctgttccactttctcttgaagtgataaagaggagactcgaaaacaactactat
cgcaccgtggatgcagtgaagcatgattccgatgttatgatttccaatgccgagacacac
ttcatcaaaagtgcggagatgaaatcaaagatcaaaaggttaaaggaatcgatcaagcgt
acattttcttcattgacggatgaaaaacaaacaaaggagtcttcgtag

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