Zingiber officinale (ginger): 122019344
Help
Entry
122019344 CDS
T08725
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122019344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122019344
Spliceosome [BR:
zof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122019344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
PRP4
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_Nup120_160
PROPPIN
MIOS_WD40
WD40_like
Nbas_N
Motif
Other DBs
NCBI-GeneID:
122019344
NCBI-ProteinID:
XP_042432757
LinkDB
All DBs
Position
1A:complement(13192613..13197654)
Genome browser
AA seq
539 aa
AA seq
DB search
MEEDSSRTLTPTLPSLPPDHVAPLHVPTVVAIAALPPPPAIAPIPVPRATRAPSVGSDSD
REGSLSRPSADDYEVSEESRLARERQEKLVQELLMKRRAYAMAVPTNDAAVRARLRRLGE
PITLFGEREMERRDRLRSIMVRLDLEGQLDRLLKVHEDEQAAAAAAGAPAEDEGPQQYPF
YTEGPNELLEARVDIAKFSVARAKARIARARRRRDDPDEDEEVEAEYAVDQAGGFILECS
EIGDDRPLSGCSFSHDCTMLATSSFSGVAKIWSMPQVTKVSTLKGHTERLTDVTFSPTED
NLVATASADKTAKLWKSDGSLLKSFNGHLDRLGRVAFHPSGKYIGTASFDKTWRLWDVNT
GTELLLQEGHSRSVYGVCFHPDGSLAASCGLDALARVWDLRTGRSILAFEGHVKSVLGLS
FSPNGYRLATGSEDNTCRIWDLRKRKCVYTIPAHSHLISQVKFEQQDGYFLATASYDTKA
MVWSAQDFKPIKTLSGHEAKVTSLDITSDGQQIATVSHDRTIKIWSSRSNEKKNDMDMD
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggattcgtcccgaaccctaaccccaacccttccttccctaccgccggaccat
gtcgccccgctgcacgtcccaaccgtcgtcgccatcgccgccctacccccgccgcctgcc
atcgcgcccatccctgtccctcgcgccacccgggccccatctgtcggatccgactccgac
cgtgagggctcgctctcccggccctcggccgacgactacgaggtctctgaggagagccgc
ctcgccagggagcggcaggaaaagctcgtccaggagctcctcatgaaacgccgcgcttat
gccatggccgtccccaccaatgacgccgctgtccgcgcccgtctccgccgactcggggag
cccatcactctcttcggtgagcgcgaaatggagcgccgggatcgactccgttccatcatg
gtccggctcgacttggagggtcaactcgatcgcctcctgaaggtccacgaagatgagcag
gctgcggcagcggctgccggtgcccctgctgaggacgagggtccacagcagtaccccttt
tacacggagggaccgaatgagcttcttgaagccagggtagatattgccaagttctcagtc
gccagggcgaaggcaagaatcgcgagggcgaggaggaggagggacgaccctgacgaggac
gaagaggttgaggctgagtatgcagtggatcaagcaggtggcttcatccttgaatgtagt
gagatcggggatgaccgtccactctctgggtgttccttctctcatgattgcacgatgctc
gccacaagctcatttagtggagttgccaaaatatggagtatgcctcaagtaacaaaggtt
tcaactttaaagggtcacactgagcgtttaactgacgtgacattctctcccacggaagat
aatctggtagcaactgcatccgctgataagactgcaaaactatggaagagtgatgggtct
cttttaaagtcatttaatggacacctagatcgtcttggacgtgttgcattccatccatcg
ggtaagtacattggtactgctagttttgacaagacatggagactctgggatgtcaatact
gggacagaattactacttcaagagggtcatagtcgaagtgtgtatggggtttgtttccat
cctgatggatctttagcagcatcttgtggccttgatgcacttgctcgtgtatgggatctt
cgtactgggagaagcattcttgcatttgaaggccatgttaagtcggtccttggacttagc
ttttctccaaatggttatcgcttagccactggtagtgaggataacacttgccgcatatgg
gacctgagaaaaagaaagtgtgtatatactataccagctcattcgcatcttatttcacaa
gtaaaattcgaacaacaggatgggtactttctggctactgcttcatatgataccaaagca
atggtttggtcagctcaagatttcaagcctattaaaactttatctggtcatgaagccaag
gttacgagtttggatatcaccagtgatgggcaacagatagcaactgtatcgcatgatcgc
actatcaaaatttggtccagcagaagcaacgaaaagaagaatgatatggacatggattga
DBGET
integrated database retrieval system
