Zingiber officinale (ginger): 122019409
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Entry
122019409 CDS
T08725
Name
(RefSeq) high mobility group B protein 6-like
KO
K09273
upstream-binding transcription factor
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
zof03000
]
122019409
03021 Transcription machinery [BR:
zof03021
]
122019409
Transcription factors [BR:
zof03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
UBF
122019409
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
UBF
122019409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
CHDNT
ORC6_2nd
Motif
Other DBs
NCBI-GeneID:
122019409
NCBI-ProteinID:
XP_042432813
LinkDB
All DBs
Position
9A:104168231..104170818
Genome browser
AA seq
533 aa
AA seq
DB search
FAAACSISKFEKYDRYSLLLHKPRSASSTSSFSALISFLSPFSSDRAMAAAVHKKGRGRK
ALKDLSSSEVNISESSSPEGVRKEVGEGVSALVSPKNAKKEKSKASSAGKNSFEDELLQL
QVRLQQLQLEKEKTDELLKQRDEQLKQKDEEIENRGKEHEKLQEELKKIQKLKEFKPTMS
FPLIKSLRGKDEVKDEKKKNKGKKPAETKKPCPAYVSWCKDQWNDVKKENPSADFKEVSN
VLGAKWKALSAVEKKPYEDKYQQEKEAYLEVVKQDKREKEALKLLEEEQMQKTAMELLEQ
YLQFQQEVEKEGKKVRKEKDPLKPKQPMSAFFLFSKERRETLLQEKKTILEISKIAGEEW
KNMMEEQKAPYEEIAKKLKENYNQEMELYKQKKTEEAVTLAKEEEEHIKVLKQEALQLLK
KKEKTDNMIKKTKQDRIRKKKEKEEQVADPNRPKRPPSSFLLFSKEARKQLTEERPGIPN
TTLNAMISVKWKEMSEGEKKTWNDKAAEGLNAYKKELEEFNKASMDNKTTPKE
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
tttgctgctgcttgttcgatttcaaaatttgaaaaatacgaccgttattcccttctgcta
cataaaccccgatccgcttcctctacgtcttcattctccgccctaatctcttttctctct
cccttctcctccgatcgagccatggcggcggcggtgcacaagaagggcaggggccggaag
gcgctgaaggacttgtcttcaagcgaggtcaacatctctgaatcatcctctccggaagga
gttagaaaggaggtcggtgaaggcgtctctgcccttgtctcgcccaagaacgccaagaaa
gagaagtccaaggcgtcatcagcggggaagaattcgttcgaagacgagttgctccagctg
caggtcaggctccagcagctccagctcgagaaggagaagacggatgagctcctgaagcaa
cgcgacgagcagctgaagcagaaggacgaggagatcgagaaccgtggcaaggagcacgaa
aagctgcaggaggagcttaagaagatccaaaagttgaaggagttcaagcccacaatgagc
tttcctcttattaagtctctaagagggaaggacgaagtcaaggatgagaagaagaagaac
aaaggcaaaaagcctgccgagacgaagaaaccatgccccgcatatgtctcgtggtgcaaa
gatcagtggaacgatgtgaaaaaagagaaccctagtgctgatttcaaggaggtttccaac
gtgcttggagcgaaatggaaggcattgagcgcagtggaaaagaagccctatgaagacaaa
taccagcaggagaaagaggcctacctggaagtcgtcaagcaagataaacgggagaaagag
gcactgaagcttcttgaagaagagcagatgcagaagaccgccatggagttgctggaacaa
tatttgcagtttcaacaggaagttgaaaaggagggcaagaaagtaaggaaagagaaggat
cctttgaaaccaaagcaaccgatgtcagctttcttcttgttctcaaaagaacgccgtgaa
actctgctacaagaaaagaagaccatccttgaaatttctaaaatagcaggggaggagtgg
aagaacatgatggaagaacaaaaagctccctatgaggagattgctaagaagctgaaggaa
aactacaaccaggaaatggaactctacaagcaaaagaagactgaggaggctgttactcta
gccaaggaagaggaggagcacatcaaagtcttgaagcaggaagcccttcagctgcttaag
aagaaggagaaaacagacaacatgatcaagaaaactaagcaggatcgtatcaggaaaaag
aaagagaaggaagaacaagttgctgatcccaataggccgaagagaccaccctcttctttt
cttctctttagcaaggaagctaggaaacaactcacggaggaaagaccaggcattccaaat
actaccttgaatgctatgatttcggtgaagtggaaggaaatgagtgaaggcgagaagaag
acatggaatgacaaagctgcagaaggtctcaatgcatacaaaaaagaattagaagaattc
aacaaggcttcgatggacaacaagactactccaaaagagtga
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