Zingiber officinale (ginger): 122019703
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Entry
122019703 CDS
T08725
Name
(RefSeq) serine/arginine-rich-splicing factor SR34-like isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122019703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122019703
Spliceosome [BR:
zof03041
]
Common components
Common spliceosomal components
SR proteins
122019703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
RRM_5
Motif
Other DBs
NCBI-GeneID:
122019703
NCBI-ProteinID:
XP_042433105
LinkDB
All DBs
Position
9A:complement(115846843..115855657)
Genome browser
AA seq
292 aa
AA seq
DB search
MSKRYSRTIYVGNLPGDIREREVEDLFCKYGTIIDVDLKIPPRPPGYAFVEFEDPRDAED
AIRGRDGYKFDGQRLRVELAHGGRGQSSSLDKHSSHSSAGRRGGVSRRTEYRVMVTGLPS
SASWQDLKDHMRRAGDVCFSEVFRDGGGTVGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA
YIRVKEYDSKRSLSRSRSRSHSYSKSASSRSRSKSPRAKSSRRSLSKSRSRSVSSRSHSA
SKGHSVSRSRSRSRSPVNSPANGKPGSKSPVKLSRNKSQSLSRSPSPAVKSD
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagcgatacagtcgaacgatctatgttggcaatctccctggcgacattcgtgaa
agagaggtggaagatctgttctgcaagtatggcacgatcattgatgttgatctaaagatt
cctccaaggcctccagggtatgcatttgttgagtttgaagatcctcgtgatgctgaagat
gctattcgtggccgtgatggatataaatttgatggtcaaagattacgggtggaacttgct
catggtggaaggggccaatcttcatcgcttgataagcacagtagccacagtagtgcaggt
cgacgtggcggtgtttccaggcgcacagagtatcgtgttatggtcactggtttaccctcc
tcggcatcatggcaagacttgaaggaccatatgcgccgagctggtgatgtctgcttttct
gaagtttttcgtgatggtggtggtactgttggtattgtagattatacaaactacgacgat
atgaaatatgcaatcaagaagcttgatgactctgagtttcggaatgcattttcacgggcg
tatataagagtgaaggagtatgattccaaaagaagcttatctaggagtcgaagtcgtagc
cattcatattcaaaaagtgcaagtagccgtagcagaagcaagtctccaagggcaaagtca
tcacgccgttcgttgtctaaatctcgatctagatctgtatcttctcgttctcactcagca
tctaaaggacattctgtatcaagatctcgatcgcgatccagatctccagttaattctcct
gctaatggcaaacctggaagcaaaagcccagttaagcttagtcggaacaagagccaaagt
ctatctcgttctccttctcctgcggtgaaatcggattag
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