Zingiber officinale (ginger): 122019786
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Entry
122019786 CDS
T08725
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122019786
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122019786
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122019786
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
DUF4983
Motif
Other DBs
NCBI-GeneID:
122019786
NCBI-ProteinID:
XP_042433237
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All DBs
Position
9A:complement(122660283..122666259)
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AA seq
477 aa
AA seq
DB search
MQTDLGKLFIGGISWDTNEDRLREYFRSYGEVVEAVIMKDRNTGRARGFGFVVFSDPAVA
ERVVMEKHMIDGRMVEAKKAVPRDDQQILNRNASSVHGSPGPGRTKKIFVGGLPSTITES
EFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKVLYKSFHELNGKTVEVKR
AVPKELSPSPNMRSPIGSYNYGLNRTNNFLSGYTQGYNPSSFGGYGMRMDSRLGLPSSAR
NSFPSYNPSFGMGMNFEPSLIPSIGGNSNFGNNIGYGRGLNPYYSGNSTRFNNLIGYSGG
SSNTNSFFSSMPRNAWGSGGLNYTTNSASSNAYMSHDNGNLGGFGSNALNWGSTTPIPSQ
VEGNTSSYTSGNLSYGGADNNFDLVNGGFRRNNGPSALKASRAGSNGGFEESYPELYGHS
SVYGDPTWLSPSSEFGGTSSFDYALDNVPSDIIGKGSAGFLGDYNITNRQPDRGIAT
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcagacggatcttgggaagctgttcattggcgggatttcctgggacaccaatgaggac
cgtctccgggagtacttcagaagctacggcgaggttgtggaggctgtgattatgaaggac
cggaacactggccgtgctcgtggttttgggttcgttgtgttctccgacccagccgtggct
gagcgagtcgtcatggaaaaacacatgattgatggcaggatggttgaggctaagaaggct
gttccaagggatgaccaacagatccttaacagaaatgctagcagtgtccatggctctcca
ggtcctggtcgtaccaagaaaatatttgtgggtggcttgccatctactataacagagagt
gaattcaagaagtacttcgatcagtttggaacaatcactgatgttgtagtgatgtatgat
cacaacacccagaggcctagaggatttggtttcatcacatatgactcagaggatgcagtg
gataaggtgctatataaaagttttcatgagttgaatggcaagactgttgaggtcaagaga
gctgtgcctaaggaactctccccaagccccaatatgcgctctcctattggttcatataac
tatggacttaataggacaaacaactttctcagtggctatactcagggatataatccaagc
tcatttggtggatatggaatgaggatggatagtagattaggtcttcctagtagtgcaaga
aacagcttcccttcatacaatcctagttttggtatgggaatgaattttgaaccaagtttg
atcccaagcattggtgggaattccaattttggcaacaacattgggtatgggcgtggtttg
aacccttattacagtggaaactccactaggttcaacaatctgattggttatagtggtggt
agttcaaacactaattcatttttcagctcaatgcctcgtaatgcatggggtagtggtggc
ctcaattatactacgaattctgcaagttccaatgcctacatgtcccatgacaatgggaat
cttggtggatttggaagtaatgctttaaactggggtagtactactcctatcccatctcaa
gttgaagggaacacttcaagttacactagtgggaatcttagttatggaggtgctgacaat
aattttgacctagtcaatggaggtttcagaaggaacaatggccctagtgctttgaaagct
tcccgtgctggatcaaatggtggattcgaagaatcctatccagaactctatggtcacagt
tcagtttatggagatccaacttggctgtctccatcttctgaatttggaggtactagttca
tttgactatgcactagataatgtgccttcagatattataggcaagggctctgcaggtttc
ctgggtgattataacattaccaatagacaaccagatagaggaattgctacataa
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