Zingiber officinale (ginger): 122019787
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Entry
122019787 CDS
T08725
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K14841
ribosome biogenesis protein NSA1
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122019787
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
122019787
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_NOL10_N
Beta-prop_EML_2
WD40
WD40_Prp19
Beta-prop_IFT122_1st
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_DCAF4
WD40_Gbeta
WDR55
CFAP251_N
Motif
Other DBs
NCBI-GeneID:
122019787
NCBI-ProteinID:
XP_042433238
LinkDB
All DBs
Position
9A:134452636..134465820
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AA seq
481 aa
AA seq
DB search
MPRTSAVECPGCPPLRALTTDALGLIKVVEVHGNPGILKVVERWGQPDASSGVLAASYAD
DKIEPLLAVARKNGFVEILNSLNGESLCNTHTKQFGLSDTSRQDDHVVGLHLLKTKGINL
FSRVATLLLCTENGNACLKSIPMSGALHDSDIGSQMSFNVCSAGKILCSSLAKSENFALF
GGKGVEVNTWDLGNCTRIWTAKSPRPNSLGLSPPPWFTAAAFLSEEDHRKIAAGTNNHQV
RLYDTSAQRRPVMSVDYRETPIKAVCPDLHGYKVYVGNASGDLGSFDIRTGKLLGGFTGK
CSGSIRSIRKHPELSVIASCGLDCYMRVWDTNTRQLLSTAFLKQHLTNVIFDSHFSYEGP
GGNRHDQPSAIQVHDDDSAGNDESVEDEVLPSSRSSEASKMSKRSKTKKLDQEELPTSGN
GQVYETTGMNEIKKRRSKIARQQDGDDGAGDTATQSEVEDGEKSSEKHGKRLKPKKRKVS
A
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgaacaagtgcagttgagtgccctggatgtccacctctgagagccttgaccact
gatgcacttggcctcataaaagttgttgaagttcatggtaatcctggaattctaaaggtt
gtagaaagatgggggcagccagatgcttcttctggtgttcttgcagcttcttatgctgat
gacaaaattgaaccgcttcttgctgttgctcgcaaaaatggtttcgttgagattctaaat
tctctaaatggagagagtttatgcaacactcacaccaaacaatttggattatcagatacc
tctcgtcaagatgatcacgttgtcggcttgcatctccttaaaaccaaaggaataaatttg
ttttctagggttgctacactacttctttgtacggaaaatggaaatgcttgcttgaaatct
attcccatgagtggtgcgctgcatgattctgatattggttctcaaatgtcattcaatgta
tgctctgccggtaaaatattatgcagttcattggctaaaagtgagaattttgccttgttt
ggagggaagggcgttgaagtgaatacatgggatcttggaaactgcacccgtatctggact
gcaaaatctcctcgtcctaatagccttggtttatcccctcctccttggtttactgctgct
gcttttttaagtgaagaagatcatcgaaagattgcagctggcacgaacaatcatcaggtt
cgtctttatgatacctcagcgcaaaggcggcctgttatgtctgttgactatagggaaact
ccaatcaaggcagtctgtccggacctacatggctataaagtttatgtcggcaatgcttct
ggagaccttggttcctttgacataagaacaggaaaattgcttggaggttttactggcaag
tgctctggaagcatcagatctataagaaaacatccagaactttcggtaatagcatcttgt
ggtttagactgctatatgcgtgtttgggatacaaatacaaggcagcttttatctacggcc
ttcctcaagcaacatctcacaaatgtgatatttgattcacatttttcatatgaaggtcca
ggcggtaatcgacatgaccaaccaagtgcgatacaggtacacgatgatgatagtgccggt
aatgatgagtctgtagaggatgaggtactgcccagctctcgcagcagcgaagcatcaaaa
atgagcaaacgaagcaaaaccaagaaactagaccaagaggagttgcccacctctggcaac
ggtcaagtgtacgaaaccacggggatgaatgaaatcaagaaaaggagaagtaagattgca
agacaacaagatggagacgatggagcaggtgataccgccactcaatctgaggttgaagat
ggtgagaaatcttcagaaaagcatggcaaaaggctaaagccaaaaaagaggaaggtttca
gcatga
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