Zingiber officinale (ginger): 122019934
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Entry
122019934 CDS
T08725
Name
(RefSeq) protein RDM16-like isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122019934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122019934
Spliceosome [BR:
zof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122019934
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
ExsD_M
Motif
Other DBs
NCBI-GeneID:
122019934
NCBI-ProteinID:
XP_042433515
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All DBs
Position
9A:complement(118556504..118560956)
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AA seq
899 aa
AA seq
DB search
MEKISERDRSSRKSSHDHDSNRDRDSGISHRNRDRDRDRDRDHKQRHREHRHRSSKNSDE
KRHGDDDRRHGSREITPSDADEERDRRRERSSSRARNSVDCELTEEPRHHYSNKRKEHRD
EEAVEKNGKRTKVSEGERDGRKERRCFEDRASDGLNGDHKEEKRDDKSSRSRKREQKYKI
RDDERENERVKDDILTDGDDKKKPRKEGRKFTDTMKVEKMEVNHGDVLSHHKEVKDEHKS
KDRLKEGNLESALEAAVHGSPSLASTMVSTNFGVPHHSVPTKVSSFNTSNENEGVSIRSD
EVPGKSSTDGTATSVTVKRGSLSLDALAKAKRALQMQKELSEKLKKIPVLNKSVSSSTDN
KQVSSVSSASQPDHFGSLASASANHIQATSSAPTVAVSGNLSVVGSAGVLPGLSNMRNIE
AVKRAQELAAKMGFHQDPEFAPLINMFPGQLSVDLAVSQKPSKAPVLRLDAQGREIDEHG
NVVNIPKLTNLSTLKVNINKQKKEAFQIIKPDLDAIAATNAHFDDQMGINKTKLLRPKRI
TFQFVEEGKWSKQAEIVKFKSQFGEAQAKELRMKQTQLEKAKAEPEINPNLIAVGVRIKK
EKLKDAIPEFEWWDKPLLPGGTYDDDVGQKLNMDKITIYVEHPRPIEPPAESAPPPPQPL
KLTKKEQKKLRTQRRLAKERDRQEMVRQGLLEPPKPKVKMSNLMKVLGSEATQDPTKLEM
EIRSAAAEREQAHVDRNIARKLTPAERREKKEKKLFEDPSSLETFVSVYKMKDLSHPQTR
FKVDVNAQENRLTGCAVISDGISVVVVEGGKKPIKRYGKLMLRRINWAAAVGNEEEGSED
AGAPSNSCALVWQGTAAKPSFNRFLVHQCRSEAAARKIFLDAGVPHYWDLAFNFSEELL
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atggagaagatctccgagcgagatcgatcaagtcgcaaatcctcgcacgatcacgatagc
aaccgcgatcgagactccgggatctcccaccgcaatcgcgacagggatcgggaccgcgac
cgcgaccacaagcaacgccatcgcgaacaccgccatcgaagcagcaaaaactcagacgag
aagcgccacggcgacgatgaccgtcgtcatggttctagggagattacaccttccgatgct
gatgaagaacgcgatcgacgccgcgagcgctcgtcgagtcgggcgcgcaactcggtggac
tgcgaattaactgaagagccgcgtcaccattactcgaacaaaaggaaggagcaccgggac
gaagaggctgttgagaagaatggaaagagaactaaggtttcggagggtgagagggacggc
agaaaggaaaggcgttgttttgaagaccgagcttctgatggtctgaacggggatcacaag
gaggagaagcgcgacgataaatcctcaaggagtaggaagagggaacagaagtacaagatc
agggacgacgaaagagagaatgagagagtgaaagatgatattttgactgatggggatgat
aaaaagaaaccacgaaaggaggggagaaaatttaccgatactatgaaggtcgagaagatg
gaagtgaatcatggcgatgtattaagtcaccataaagaggtcaaggatgagcacaagtct
aaagatagattgaaggaaggaaatctggagagtgccttggaggctgctgttcatggatca
ccctctttggcttcaacaatggtttctacaaattttggtgtacctcatcattctgtgccc
accaaggtatcttcatttaatacctccaatgaaaatgagggagttagtattagatctgat
gaggttcctggaaaatccagtacagatggcacagcaacttcagttactgtcaaaaggggc
agcttgtctcttgatgctttagcaaaagctaaaagagctctacagatgcagaaggagttg
tcagagaagctcaagaagattcctgtgttaaacaaatctgttagctcaagcactgataat
aaacaagtatcatctgtatcaagtgcatcccaacctgatcactttggttctttggcttct
gcctcagcaaaccacattcaggcaacatcaagtgcccctacggttgcagtatcaggaaat
ttatcagttgttggaagtgctggtgtccttccggggttgtcaaacatgcgcaacatcgaa
gcagtaaagcgtgcacaggaacttgctgcaaaaatgggtttccatcaggatcccgaattt
gccccacttattaatatgttccctggacagttatcagttgacttggcggtatctcagaaa
ccttccaaggctcctgtattgcgcttagatgcacagggtagagaaattgatgaacatgga
aatgttgtaaacatacctaagctcacaaatcttagcacccttaaggttaatattaacaag
cagaaaaaagaggcattccaaataataaagccggacttagatgccattgcagcaacaaat
gctcattttgatgaccaaatgggaataaataaaactaagttattaaggcctaaaagaatt
acatttcagtttgttgaggagggcaaatggtcaaagcaggcagagatcgtgaaatttaag
agtcaatttggagaagcacaagctaaagagttaaggatgaagcagactcaactggagaaa
gcaaaggcggagccagagattaatccaaacttaatagcagtaggagtgaggatcaagaag
gaaaagttgaaggatgcaatacctgagttcgagtggtgggacaaaccgctactacctgga
ggaacctatgatgatgatgtgggacagaagcttaatatggataaaattacgatttatgtg
gagcacccacgaccaattgaacctcctgcagagtcagctcctcctccaccacagcctctc
aagctaacaaagaaagagcaaaagaaacttaggacccagaggcgtctagcaaaggagaga
gataggcaagagatggttagacaaggcctcttagagccccctaagccaaaggttaagatg
agtaacctgatgaaagttcttggttctgaagcaactcaagacccaacaaaacttgaaatg
gaaattcgtagtgctgctgctgagcgcgaacaagctcatgttgatagaaacattgctcgc
aaactcacccctgctgaacggcgtgaaaagaaagagaagaagctttttgaggatccaagt
tcacttgagacttttgtttctgtttacaagatgaaagacctctcgcatccacaaacacgt
ttcaaagtcgatgtgaatgcgcaggagaataggttgacaggttgtgctgtgatatcagat
ggaattagtgttgtggttgtggaaggaggcaaaaaaccaataaaaaggtacgggaagctg
atgctgagacgcatcaactgggctgctgccgtgggcaacgaggaagagggttctgaagat
gcaggtgctccttccaacagttgtgctttggtttggcagggtaccgctgctaaacccagc
ttcaacaggtttcttgtccatcaatgcagaagtgaagctgctgctaggaagatatttctc
gatgctggagttccacattactgggatctggccttcaatttttctgaggaactactgtaa
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