Zingiber officinale (ginger): 122019994
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Entry
122019994 CDS
T08725
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122019994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122019994
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122019994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
122019994
NCBI-ProteinID:
XP_042433606
LinkDB
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Position
9A:6888170..6894196
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AA seq
482 aa
AA seq
DB search
MQMDLGKLFIGGISWDTNEDRLREYFKNYGEVVEAVIMKDRNTGRARGFGFIVFSDPAVA
ERVVMEKHMIDGRMVEAKKAVPRDDQQILNRSASSVHGSPGSGRTKKIFVGGLPSTITES
EFKKYFDQFGSITDVVVMYDHNTQRPRGFGFITYDSEDAVDKVLYKNFHELNGKTVEVKR
AVPKELSPGPNMRSPVGAYNYGLNRVNNFLNGYTQGYNPSSFGGYGMRMDSRLGLPSSAR
NTFPSYNPSFGMGMNFEPSLIPSLGGNSSFGNNIGYGRGLSPYFSGNSTRFNSPIGYGGG
SANTNSFFSSMARNAWGTGGLNYTTNAATSNAYMTHGNGNLGGVGSNSLNWGSTAPISSQ
VGGNTSSYTGGSLSYGGVDNNFDLINGGSGRNNGPSALKASRVGSNGGFEETYPELYGGS
SVYGDPTWQDPSWRSSSPEFGGSGSFGYALDNVPSDIIGKGSAAFMGDYSITNRQPDRGI
AT
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcagatggatcttgggaagctgttcattggcgggatttcctgggacactaatgaggac
agactccgggagtacttcaaaaactacggtgaggtcgtggaggctgtgatcatgaaggac
cggaacactggccgtgctcgtggttttggattcattgttttttcagacccagcagtggct
gagcgagttgtcatggaaaaacacatgatcgatggcagaatggttgaggctaagaaggct
gttccaagggatgaccaacagatccttaatcgaagcgccagtagtgtccatggctctcca
ggttctggtcgtaccaagaaaatatttgttggtggcttgccatctacaataacagagagt
gaattcaagaagtactttgatcagtttggatcaattactgatgttgtagtgatgtacgat
cacaacacccagagacctaggggatttggtttcatcacctatgactcagaggatgcggtg
gataaggtgctttataaaaactttcacgagttgaatggtaagactgttgaggtcaagaga
gctgttcctaaagaactctcccctggtcccaatatgcgctctcctgttggtgcatataac
tatggtcttaatagagtaaacaactttcttaatggctatactcagggatataatccaagc
tcatttggtggatatggaatgaggatggatagtagattaggccttcctagtagtgctaga
aataccttcccatcatacaatcctagttttggtatgggaatgaattttgaaccgagtttg
atcccaagccttggagggaattccagttttggcaacaatattgggtatggacgtggtctg
agcccttatttcagtgggaactcaactaggttcaacagtccaattggttatggtggtggt
agtgcaaacactaattcattttttagctcaatggctcgtaatgcatggggcactggaggc
cttaattatactacaaatgctgcaacttccaatgcgtatatgactcatggcaatgggaat
cttggtggagttggaagtaatagtttaaattggggtagcactgctcccatctcatctcag
gttggggggaacacttcaagctatactggtgggagtcttagttatggaggtgtggacaac
aattttgatctaatcaatggggggtctggaaggaacaatggccctagtgctttgaaagct
tcccgtgttggatcaaatggtggattcgaagaaacctatccggaactctatggtggcagt
tcagtttatggagacccaacttggcaagacccatcttggcggtcctcgtctcctgaattt
ggaggttctggttcatttggttatgcacttgataatgtgccttcagatatcataggcaag
ggctctgcagctttcatgggtgattatagcattaccaatagacaaccagatagagggatt
gctacttaa
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