Zingiber officinale (ginger): 122020020
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Entry
122020020 CDS
T08725
Name
(RefSeq) DNA mismatch repair protein MSH2-like isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122020020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
122020020
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122020020
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
ATG17_like
Alb1
DIL
Motif
Other DBs
NCBI-GeneID:
122020020
NCBI-ProteinID:
XP_042433653
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Position
9A:117332554..117345860
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AA seq
942 aa
AA seq
DB search
MAAEASPGANKLPELKLDARQAQGFISFFKTLPKDPRAVRFFDRRDYYTVHGENATFVAR
SYYHTTTALRQLGSGSDGISSVSVSKSMFESIARDLLLERTDHTLELYEGSGSNWKLAKT
GTPGNINSFEDILFANNDMQDSPVTVALFPVFRENQCTVGLSFVDMTKRKLGAAEFLDDN
QFTNTESVLVALGCRECLIPAECGISIEFKALNVALSKCNVLLSERKKSEFKSRDLMQDL
SRIIRGPTEPVRDLLSDFEYALSSLGALISYMELLADDNNYGNFTIEKYNLDNCMRLDSA
AMRALNVLESKTDFNKNFSLFGLMNRTCTAGMGKRLLNRWLKQPLLDVDEIICRLDLVQA
FAEDAELCQGLRQHLKRISDIERLTQALRKKRSNLQPVIKLYQSSIRVPYIRDVLEHYEG
QFSSLLRKKYSEPLNFWMGEDKLNKFIALVEISIDLDQLENGEYMISPGYDESLAVLRNQ
LDEAEQQINNLHKQTANDLELSVDKSLKLEKGTQFGHAFRITKKEEQKVRKKLNNAYIVL
ETRKDGIKFTNSKLKKLGNQYQEILNDYTNCQKGLVARVVDVSASFSEIFEAVAGILSEM
DVLLSFANLATSCPVPYVRPDITPSDQGDIILEGCRHPCVESQDGVNFIPNDCKLVRGKS
WFQIITGPNMGGKSTFIRQVGVNVLMAQVGCFVPCERATISIRDCIFARVGAGDCQLRGV
STFMQEMLETASILNGASEKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVTRAPTLFAT
HFHELTTLALVDTQECSSLATVGVANYHVGAHIDSSSRKLTMLYKLQPGACDQSFGIHVA
ELANFPEDVVSLARRKADELEDFSQGSKDSDGSEKQVGCKRKRLCTPEDITKGAARAHRF
LEEFAALPLDQMDMKQSMEHVNKLRTELENDASNFPWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagaggcttctcccggcgccaacaagctgcccgaactcaaattagatgctagg
caggcacagggattcatctcgttcttcaaaaccctccccaaagatcctagagctgtgcgc
tttttcgatcgccgggactattatacagttcatggtgagaatgctacttttgttgcaagg
tcatattaccacacaaccactgctttgcgacaattaggcagtggctcagatggaatttcc
agtgtgagtgtcagtaaaagcatgtttgagtctatagctcgtgatcttttactggagagg
acagatcacacattagagctatatgaaggaagtggttcaaattggaaattggcaaaaaca
ggaacacctggcaatattaatagttttgaagatatcttgtttgccaataatgacatgcag
gattcccccgtgacagttgcattgtttcctgttttccgtgagaaccagtgtactgtggga
ctaagttttgtagatatgaccaaacggaagcttggtgcagcagagttccttgatgataat
cagttcacaaatactgaatcagttttggtagctcttggttgtagggaatgtcttatacct
gcagaatgcggaatatcaatagaattcaaagctcttaatgtagctttatccaaatgtaat
gttcttctgagtgaaagaaagaaatctgagttcaagtcaagggatttgatgcaggatctc
agtaggatcatcagagggcctactgaacctgttagagatttgctttcagattttgaatat
gcattgagttccctaggtgcattgatatcttatatggaattgcttgctgatgataacaat
tatgggaattttaccattgaaaaatacaacttagataactgtatgaggttggattctgca
gcaatgagagcactgaatgtccttgaaagcaaaacggattttaataaaaacttcagtttg
tttggtctaatgaatagaacgtgcactgctggcatgggcaaaaggttgcttaataggtgg
ctgaaacaacctttgttagatgtcgatgaaatcatttgtaggttagacttggttcaggca
tttgcagaggacgcagagctttgtcaaggattgagacaacatctgaagagaatttctgat
atcgagaggttgacccaggcactgaggaagaagagatctaatttgcaaccagtcataaaa
ttgtatcagtcaagcattagggtaccttacataagagatgtacttgagcattacgaaggt
caattttcctcactgttaaggaaaaagtattccgagcccctaaacttctggatgggtgag
gataaactaaataagttcatcgctcttgttgaaatatctattgatcttgatcaacttgag
aatggagaatacatgatctcacctgggtatgatgaaagcttagctgtgctaaggaaccaa
ctcgacgaagcggagcaacaaataaacaatttgcataagcaaacagcaaatgatcttgaa
ctttctgttgataagtcactgaaattggagaagggaacacaatttggacatgcatttagg
atcacaaagaaagaagaacaaaaggtgagaaagaaacttaataatgcttacattgttctg
gaaactcggaaggatggtataaagttcacaaattcgaagttaaaaaagttgggaaatcag
taccaagagatactgaatgattacacaaattgtcagaaaggtcttgtggctagagtagtt
gatgtttctgcttccttttctgagatatttgaggctgttgccgggattctatctgagatg
gatgttcttctgagctttgctaatttggcaaccagttgtcctgttccatatgtgagacca
gatatcacaccctcggatcaaggggatatcatactagaaggttgcagacatccttgtgtg
gaatctcaggatggtgttaatttcatacctaatgattgtaaactagtccgtggaaagagt
tggtttcagatcataacagggccaaatatgggcgggaaatcaacttttatccgacaggtt
ggtgtgaatgtgctgatggcgcaagttggttgctttgttccttgtgagagagcaaccatt
agcataagagattgtatatttgctcgtgtcggagccggtgattgccagcttcgcggtgtt
tctacattcatgcaagaaatgcttgagactgcttcaatcttgaatggcgcttctgagaag
tcgctgataattattgatgagttgggccgtggaacatcaacttatgatggatttggcttg
gcatgggcaatctgtgaacatcttgtggaggttactagggcgccaactctttttgcaact
catttccatgaactcactacattagctcttgtagacacccaggaatgttctagtctggcc
accgttggagtggcaaattatcatgttggagcgcacatagattcatcaagtcgaaagttg
actatgctttacaagctccaacctggtgcttgtgatcaaagcttcggtattcatgttgcg
gaacttgcaaattttcctgaagatgttgtaagtctagctagaaggaaagctgatgaattg
gaagatttttctcagggatcaaaggacagtgatggttcagagaaacaggttgggtgtaag
cggaaaagattatgcacacctgaggacataactaaaggcgcagctcgtgcccatcgcttt
ctagaggagttcgctgctctacctttggatcagatggacatgaaacagtcaatggaacat
gtgaataagctgaggactgagctggagaacgatgcttccaactttccatggctccagcaa
tttttctga
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