Zingiber officinale (ginger): 122020026
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Entry
122020026 CDS
T08725
Name
(RefSeq) protein spotted leaf 11-like
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122020026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122020026
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122020026
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
U-box type E3
122020026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
U-box
ARM_ARMC5
HEAT_2
Arm_2
zf-RING_UBOX
zf-C3HC4_4
ARM_LIN_C
MLKL_N
Neurochondrin
zf-Nse
CoV_NSP7
Luciferase_N
Z1
Motif
Other DBs
NCBI-GeneID:
122020026
NCBI-ProteinID:
XP_042433671
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All DBs
Position
1A:complement(18200853..18205558)
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AA seq
664 aa
AA seq
DB search
MEEGENEAPAPLPVSSVVERLVALLEEIAAISDYRNSYKKLFFNLSRRIKLLAPMFEELK
ESKVPIPVSTLVAMEKLNRALDLAKELLLLGSKGSKIFLVLERDQMMERFQDVTSQLEQA
LDEISLDEIDISDEVKEQVELMHSQFKRAKERIDTIDMELYADLLKVYNMTTDAKVDPVI
LRRLTEKLQLITIADLKQESVTLHEMVSDGGDPGEVIEKMSMLLKKIKDFVQTHEPELGF
LTATNVGNTPVIPDDFRCPISLELMGDPVIVSTGQTYERRCIEKWMEAGHDTCPKTQQKL
FSTSLTPNYVLRSLIDQWCETNGMDPPKRPVQTGKPQSVCSAGEHAKVVDLVRKLSSQNL
EDQRSAAGELRSLAKRNADNRICIAEAGAISILVSLLSTNDARTQEHAVTALLNLSIYEE
NKSKIIFSGAVPGIVHVLKKGSMEARENAAATLFSLSVVDRNKVIIGDSGAIPPLVSLLS
EGSQRGKKDAATALFNLCIYHGNKGRAVRSGAIQILITLLTDPEGTMMDEALAIMAILSG
HPEGKAAITAAEALPVLVKVIKSGSPRNKENAAAVLVHLCNGEQQQQNLTELQEQGMMVP
LQEMIESGTDRGKRKAAQLLERMKRFLEQQEAQSQAEAQSRAQIQEMADNLTGTISSALT
LTDT
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggaggagggagaaaacgaagcccctgcgccgctgccagtctcgtcggtggtcgagagg
ctggtagcgttgttggaggagatcgccgccatctctgactataggaactcttacaagaag
ctatttttcaatctctcgcggcggatcaagctgctggcgcccatgtttgaggagctcaag
gaaagcaaggtcccgatccccgtatcgacgctagtggccatggaaaagcttaatcgggcc
cttgatttagcgaaggagctactcctactggggagcaaagggagcaagatctttctggtt
ctagagcgagatcaaatgatggaaagattccaagatgttacttctcaactggaacaagct
ttggatgaaatttcccttgatgagattgacatatctgatgaagtgaaagaacaggttgag
cttatgcattctcagttcaaaagagccaaagaaaggattgatactattgatatggagctt
tatgctgatctgttaaaggtttacaatatgaccactgatgccaaggtggatcctgtgatt
ctacggagattgacagaaaaattacagctgatcactatagcagatctcaaacaagaatct
gttaccttgcatgagatggtttctgatggtggagatcctggagaggtcattgaaaagatg
tccatgctgctaaaaaagatcaaggattttgtacaaacacatgaaccagaactgggcttt
ctgacagccacaaacgttggcaatactcctgtcattccagatgatttccgctgccctata
tccctggagctaatgggggatccagttattgtgtcaactggacagacttatgaacggagg
tgcattgaaaaatggatggaagcgggacatgatacttgtccaaagacacaacaaaaacta
ttcagcacatcgttaaccccaaattatgtccttcgcagcctcatagaccaatggtgtgaa
acaaatggcatggatccacccaagcgtcctgtgcaaactggaaaacctcaatcagtctgt
tctgcaggtgaacatgcaaaagttgttgatcttgttcgaaagctatcttcacagaacctt
gaagatcaacggtcagctgctggcgaacttcgttcgcttgccaagagaaatgcagataac
aggatctgcattgctgaggctggtgctatatctattcttgtcagtttgctcagtacaaat
gatgctcgcacacaggagcatgctgtcactgcacttctgaacctctctatatatgaggaa
aacaagagtaagataatcttctctggcgctgtgcctgggatagtgcatgttctcaagaag
ggcagcatggaagcacgggagaatgctgctgcgacacttttcagcctctcggtggtggat
aggaacaaagtgataattggtgattcaggagctattccccctcttgtttcgcttttaagt
gaaggaagccaaagaggaaagaaggatgctgcaacggcactcttcaacctatgcatttac
catggtaacaagggaagggcagttcggtctggggcgattcaaatactgataacactcttg
acagatccagaaggaactatgatggatgaagcacttgctatcatggcaatcctttcaggc
catcctgagggaaaggcagcaatcacggctgctgaagcactgccagtgctagtaaaggtg
ataaaaagtgggtcaccgaggaacaaggaaaatgcagcagctgtcttggtacacctctgc
aatggggagcaacagcaacaaaatttgacagagttgcaggagcaagggatgatggtgccc
ctgcaggaaatgatagagagtggcactgaccgaggcaagaggaaggctgcacagttgctt
gagcgcatgaaaagatttttggaacaacaggaggctcaaagtcaggctgaggctcagtct
cgagctcaaattcaggaaatggcagacaatttaacgggtacaatttcatcggctttgact
ttgactgatacgtag
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