Zingiber officinale (ginger): 122020073
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Entry
122020073 CDS
T08725
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC2A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
zof04131
]
122020073
04121 Ubiquitin system [BR:
zof04121
]
122020073
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122020073
Membrane trafficking [BR:
zof04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
122020073
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122020073
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF1117
Zn_ribbon_19
zf-RING_2
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-RING_UBOX
zf-rbx1
zf-RING_5
zf-ANAPC11
DUF7573
zf-Nse
zf-C3HC4_3
Rad50_zn_hook
zf-RING-like
zf-C3H2C3
Motif
Other DBs
NCBI-GeneID:
122020073
NCBI-ProteinID:
XP_042433743
LinkDB
All DBs
Position
1A:complement(18345591..18347162)
Genome browser
AA seq
399 aa
AA seq
DB search
MPSSMATPSSYWCYRCRRFVRVWPQEAIVCPDCDGGFLEEVDSPPRRFHSPTESRRRRLV
PSSPGSPAVGSDGSAADGLPRQSSDLRYRRHRRTSARDRSPFNPVIALRSPSRSSARDSD
LDSSTSFELYYEDGTGSGLRPLPESISDFLMGSGFDRLLDQLAQIEVNGIVRGRGCDNSP
ASKVAIESMPTVEIVDEHIGKDCHCAICMDPFELGVEAREMPCKHIYHQDCILPWLSLRN
SCPVCRHEMPTDVQGHDTAMAEEGETTAAAGSEEETVGLTIWRLPGGGFAVGRFSGGRRA
GEVQLPVVYTEMDGGFNNSGAPRRVSWPGMPTRSRESSGIHRAVRSFFSFFGFARSSSSS
PRTSLEPQPSFPHSDRRSIFRRRSRSRSSNFEANANVNA
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgtccatggcgacgccgtcttcctactggtgctaccgctgtagacggttcgtc
cgcgtgtggccgcaggaggcgatcgtctgtcccgactgcgacggcggcttcctcgaggag
gttgattcgccgcctcgccgctttcactctcccacagagagccgccgccgccgtcttgtc
ccctcatcgcctggttctcccgctgtcggaagcgatggatccgccgctgacggcctcccc
cgccagtcgtccgatctcagataccgccgccaccgccgcacgtcggctcgcgaccgttct
ccctttaaccccgtcatcgccctccgcagcccgtcccgcagcagcgcccgcgactccgat
ctagattccagcaccagcttcgagctctactacgaagacggcaccggatctggcctccga
ccgttgccggaaagcatctcggatttcctgatgggctccggcttcgaccgcctactcgac
cagctcgcacagatcgaggtcaacggcatcgtccgcgggagggggtgcgacaactctccg
gcgtcgaaggtcgccatcgagtcgatgcccacggtggagattgtcgacgaacacatcggg
aaagattgccattgcgccatctgcatggaccccttcgagctcggggtagaggctcgggag
atgccctgcaaacacatttaccatcaagactgcatcttgccatggctatcgctacggaac
tcatgccctgtctgccgccatgagatgccgacagatgtgcaaggacacgacacggcaatg
gcggaagagggcgagacgaccgctgcagccgggagcgaggaggagaccgtgggtctcacg
atatggaggcttcccggcgggggtttcgcggtggggaggttctccgggggcaggagagca
ggggaagttcagcttcccgtagtttacacagagatggatggtggattcaataacagcgga
gccccgagaagagtgtcatggcctggaatgccgaccaggtcgagggagagcagtggaatt
caccgagcagttcgcagtttcttctcgttctttggattcgcacggtcatcttcctcctct
ccacggacgagcttagaacctcaaccatcattccctcacagcgacaggaggtcaattttc
agaaggcgctcgagaagtagaagctccaacttcgaagcaaatgccaacgtgaatgcttga
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integrated database retrieval system
